PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.03G091500.4.p

Common Name

GLYMA_03G091500

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 121aa MW: 14132.3 Da PI: 10.3224

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G091500.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.1	1.1e-26	11	100	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA++ GF vr ++ ++s+ +++i++r+f C+k+g++ + ++kt+ +++ra+ r gC+a++ vk ++ gkw+vtk+++eH+H l+ Glyma.03G091500.4.p 11 NFYEEYARREGFVVRLDRCHRSEVDKQIISRRFSCNKQGFHVRVRNKTKPVHKPRASIREGCEAMMYVKVNTCGKWVVTKFVKEHSHLLN 100 6*****************************************9999*************************************885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-24	11	100	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MEFQSEEAAK NFYEEYARRE GFVVRLDRCH RSEVDKQIIS RRFSCNKQGF HVRVRNKTKP 60 VHKPRASIRE GCEAMMYVKV NTCGKWVVTK FVKEHSHLLN ASALPYNSLI VSLIFFSPRH 120 *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.21732	0.0	leaf\| seed coat

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G091500.4.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT097755	0.0	BT097755.1 Soybean clone JCVI-FLGm-16I6 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006576241.1	2e-78	uncharacterized protein LOC100802375 isoform X1
Refseq	XP_028224876.1	2e-78	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_028224877.1	1e-78	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A445L9Q8	8e-85	A0A445L9Q8_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform D
STRING	GLYMA03G22670.2	8e-78	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-37	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Glyma.03G091500.4.p