PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G082400.1.p
Common NameGLYMA_03G082400, LOC100777236
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 507aa    MW: 56655.4 Da    PI: 8.7198
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G082400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-1657103148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg WT+e+d+ l +av+ + g++Wk+Ia+ ++ g+++ qc +rwqk+l
  Glyma.03G082400.1.p  57 RGGWTEEDDDTLTNAVQVFNGKNWKKIAEFLP-GKSEVQCLHRWQKVL 103
                          789*****************************.************986 PP
2Myb_DNA-binding58.31.7e-18109155148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEd+++++ v  +G++ W++I++ ++ gR +kqc++rw ++l
  Glyma.03G082400.1.p 109 KGPWTQEEDDKIIEMVSTHGPKKWSLISKSLP-GRIGKQCRERWCNHL 155
                          79******************************.*************96 PP
3Myb_DNA-binding56.56.2e-18161204146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +++WT+eE++ l da++ +G++ W+ Ia+ +  gRt++++k++w++
  Glyma.03G082400.1.p 161 KDPWTQEEELALMDAHRIHGNK-WAEIAKVLH-GRTDNSIKNHWNS 204
                          689*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.75652103IPR017930Myb domain
SuperFamilySSF466897.18E-1555110IPR009057Homeodomain-like
SMARTSM007176.3E-1456105IPR001005SANT/Myb domain
PfamPF002492.3E-1457103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2059115IPR009057Homeodomain-like
CDDcd001675.47E-1260103No hitNo description
PROSITE profilePS5129430.991104159IPR017930Myb domain
SuperFamilySSF466893.37E-31106202IPR009057Homeodomain-like
SMARTSM007171.1E-17108157IPR001005SANT/Myb domain
CDDcd001674.23E-15111155No hitNo description
PfamPF139219.6E-19112170No hitNo description
Gene3DG3DSA:1.10.10.601.5E-27116161IPR009057Homeodomain-like
SMARTSM007172.1E-16160208IPR001005SANT/Myb domain
PROSITE profilePS5129422.526160210IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-24162210IPR009057Homeodomain-like
CDDcd001675.91E-12163206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MAEEKSEQHC SENKQTNANS SSSVSEGSGS AMPKSSTERK SALPSNRRTT GPVRRARGGW  60
TEEDDDTLTN AVQVFNGKNW KKIAEFLPGK SEVQCLHRWQ KVLHPELVKG PWTQEEDDKI  120
IEMVSTHGPK KWSLISKSLP GRIGKQCRER WCNHLNPDIK KDPWTQEEEL ALMDAHRIHG  180
NKWAEIAKVL HGRTDNSIKN HWNSSLKKKM NFYLATGRLP PIVSSSKTTD INLGNSDKNQ  240
LESSETVREF GDSSNVPAKG SADSDCIECN RSSNKGFSCS NLEPVFGDYF RINSEPKFEN  300
PGLNDNPRVD HCMSNGENKS CSLTRNFYSK ESQTLGSFCY EPTLPLDSYY SNISGLQQNE  360
LFASPMMSSV GYLTPPPVKG SELCSESPES ILKKAAKTFP TPSILRKRSV VKRPVTPSAV  420
AKGVNDSHAY NEQERTNDIT GSEVVRLPVS PVNNCYGSNI PHNKAFNTTS PYRSRSRQTA  480
IKCLEKQLDF AFEKEKHARK MKKCDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-63602109159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-63602109159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G082400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522206.10.0transcription factor MYB3R-5
RefseqXP_025983614.10.0transcription factor MYB3R-5
SwissprotQ6R0321e-126MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLK7KDR90.0K7KDR9_SOYBN; Uncharacterized protein
STRINGGLYMA03G19470.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-121myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]