PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G078000.1.p
Common NameGLYMA_03G078000, Glyma03g14440.1
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 310aa    MW: 35133.7 Da    PI: 9.3995
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G078000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-072873346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                         rWT++E +l+ +a + + ++   +W ++a+ ++ g+t  +++  ++ 
  Glyma.03G078000.1.p 28 RWTPQENKLFENALAVFDKDtpdRWLKVAALIP-GKTVGDVIKQYRE 73
                         9********************************.******9999986 PP
2Myb_DNA-binding46.58.2e-15136180347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Glyma.03G078000.1.p 136 PWTKEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 180
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.6292479IPR017884SANT domain
SMARTSM007171.3E-72577IPR001005SANT/Myb domain
SuperFamilySSF466894.38E-112783IPR009057Homeodomain-like
CDDcd001672.25E-62874No hitNo description
PfamPF002496.2E-62873IPR001005SANT/Myb domain
PROSITE profilePS5129420.236129185IPR017930Myb domain
SuperFamilySSF466892.23E-17130184IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-17132184IPR006447Myb domain, plants
SMARTSM007172.6E-13133183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-13133180IPR009057Homeodomain-like
PfamPF002493.7E-12136180IPR001005SANT/Myb domain
CDDcd001674.51E-11136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MNRGIEVLSP ASYLRSSNWL FQESLGTRWT PQENKLFENA LAVFDKDTPD RWLKVAALIP  60
GKTVGDVIKQ YRELEEDVSV IESGFIPLPG YTAADSFTLE WVNNQGFDGL RQFYGVTGKR  120
GASTRPSEQE RKKGVPWTKE EHRQFLMGLK KYGKGDWRNI SRNFVTTRTP TQVASHAQKY  180
FIRQLSGGKD KKRSSIHDIT MVNLPEAKSP SSESNNRPYS PDHSVKDVNP PSQNQRLSTT  240
MVIKQEHDWK LPCETVPMLF NSTNGNMFMT PLCGISSYGS KPLQEQYFLS GCQFGPYDTI  300
MQMPSMQNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-162691873RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.188530.0flower| hypocotyl| leaf| meristem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G078000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311840.0KT031184.1 Glycine max clone HN_CCL_88 MYB/HD-like transcription factor (Glyma03g14440.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240137.10.0MYB transcription factor MYB51
RefseqXP_006576272.10.0MYB transcription factor MYB51 isoform X1
RefseqXP_014628871.10.0MYB transcription factor MYB51 isoform X1
RefseqXP_028224761.10.0transcription factor DIVARICATA-like
RefseqXP_028224762.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-114DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A445L8Z90.0A0A445L8Z9_GLYSO; Transcription factor DIVARICATA isoform A
TrEMBLC6T9840.0C6T984_SOYBN; MYB/HD-like transcription factor
STRINGGLYMA03G14440.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-123MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]