PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G070500.1.p | ||||||||
Common Name | GLYMA_03G070500, LOC100779003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 692aa MW: 76833.4 Da PI: 6.4328 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.7 | 1.1e-23 | 126 | 226 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f kvlt sd++++g +++ +k+a e+ +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF Glyma.03G070500.1.p 126 FSKVLTASDTSTHGGFSVLRKHAMEClpaldMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL-- 213 88****************************977777888*************************************************.. PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 + +++el+v+v+r Glyma.03G070500.1.p 214 RGDNGELRVGVRR 226 3489999****98 PP | |||||||
2 | Auxin_resp | 92.8 | 5.8e-31 | 252 | 332 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F+++v+k+++a+ +++svGmR+km+fe++ds+e +r+sGt+vgv+d++p +W nSkWrsLk Glyma.03G070500.1.p 252 ASHAVATQTLFVVYYKPRT--SQFIISVNKYLEAM-NRFSVGMRLKMRFEGDDSAEtdKRFSGTIVGVEDISP-HWVNSKWRSLK 332 789***************6..9*************.89****************9833577**********99.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.02E-38 | 117 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-39 | 118 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.73E-21 | 124 | 226 | No hit | No description |
SMART | SM01019 | 7.0E-22 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-21 | 126 | 226 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.308 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.8E-28 | 252 | 332 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.2E-8 | 558 | 616 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.165 | 580 | 661 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.05E-12 | 582 | 656 | No hit | No description |
Pfam | PF02309 | 2.5E-6 | 623 | 664 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 692 aa Download sequence Send to blast |
MLSRAANGEV AGSGYSGEDE MYEPLWKGCA GPLVDVPRVG QRVFYFPQGH MEQLEASTNQ 60 ELNQRIPLLK LPTKILCRVV NVHLLAEQET DEVYAQITLV PESNQDEPMN PDPCTAEPPR 120 APVHSFSKVL TASDTSTHGG FSVLRKHAME CLPALDMSQP TPTQELVAKD LHGYEWRFKH 180 IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGDNGEL RVGVRRLARQ ASSMPSSVIS 240 SQSMHLGVLA TASHAVATQT LFVVYYKPRT SQFIISVNKY LEAMNRFSVG MRLKMRFEGD 300 DSAETDKRFS GTIVGVEDIS PHWVNSKWRS LKVQWDEPAA VPRPDRVSPW EIEPFVASAS 360 TPSVQPTMVK TKRPRPPSET PDVDTTSAAS VFWDAGLQQA DMAQKNVLAE SKRNDSTGTW 420 HHMQTDMNSK SNSGNAMLRN QTEGSWLSSP HSSCPSHLFQ DATDDSKSVS AWPVSKPHSS 480 RLNNDHVLDQ VDKESKVETA TSYRLFGIDL IDHSRNSPSV EKASAQAGNA PKVTTEGCTS 540 TLTRTDAGHL SDVPMASSKE RKQEQQQVSP KETQSKQICR SRTKVQMQGV AVGRAVDLTM 600 LDGYDQLINE LEEMFDIKGQ LQHRNKWEIV FTDDEGDMML VGDDPWPEFC NMVRRIFICS 660 SQDVKKMSCG SKLPISSVED GTVISSDTTE T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-164 | 5 | 355 | 3 | 355 | Auxin response factor 1 |
4ldw_A | 1e-164 | 5 | 355 | 3 | 355 | Auxin response factor 1 |
4ldw_B | 1e-164 | 5 | 355 | 3 | 355 | Auxin response factor 1 |
4ldx_A | 1e-164 | 5 | 355 | 3 | 355 | Auxin response factor 1 |
4ldx_B | 1e-164 | 5 | 355 | 3 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 371 | 375 | KRPRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26034 | 0.0 | hypocotyl| leaf| root| somatic embryo| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G070500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520962.1 | 0.0 | auxin response factor 9 isoform X1 | ||||
Refseq | XP_028224651.1 | 0.0 | auxin response factor 9-like | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A445L8M2 | 0.0 | A0A445L8M2_GLYSO; Auxin response factor | ||||
TrEMBL | I1JM14 | 0.0 | I1JM14_SOYBN; Auxin response factor | ||||
STRING | GLYMA03G17450.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1511 | 33 | 96 | Representative plant | OGRP550 | 15 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G070500.1.p |
Entrez Gene | 100779003 |