PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G065700.1.p
Common NameGLYMA_03G065700, LOC100780785
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 731aa    MW: 82385.5 Da    PI: 6.0663
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G065700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.63.4e-1123577281374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL+ cA+av+++d+++a++lL++++++++p gd +qRla+ f+ +L+arla+++s++yk l  ++ts    ++ l+a++l+  ++P+
  Glyma.03G065700.1.p 357 LRTLLFLCAQAVAADDHRNANELLKHIRQHSTPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVGKRTS---AANYLKAYHLYLAACPF 443
                          5789*************************************************************99999...899************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           k+s +t N +I e+ +++ +vH+iDf+i +G+QWp+++q L+ R++gpp+lRiTg++ p++g   +e++ etg+rLa +Ae+++vpfe+
  Glyma.03G065700.1.p 444 RKISKFTSNITIRESSAQSMKVHVIDFGIFYGFQWPTFIQRLSWRAGGPPKLRITGIDFPQPGfrPAERILETGRRLAAYAEAFNVPFEY 533
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          ++ +ak++++++leeL+++++E l+V + ++ ++lldesv ++s+r+++L l+++++Pk++++   +   +++ F++rf eal +ys+lf
  Glyma.03G065700.1.p 534 KA-IAKKWDTIQLEELEIDRDEFLVVTCFYRGKNLLDESVVVDSPRNNFLTLIRRINPKLFIHGIMNGAFDAPFFVTRFREALFHYSSLF 622
                          **.7************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d+le+ +pre+ er+ +E+e++gre+ nv+aceg er+er e++++W++r+ +aGF + +++ +++k a   +r  + + + ++e+s++l
  Glyma.03G065700.1.p 623 DMLETIVPREDWERMLIEKEIFGREALNVIACEGPERVERPESYKQWQARILRAGFVQQSFDRRTVKMAMEKVRGSYHKDFVIDEDSQWL 712
                          *****************************************************************************888********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          ++gWk+r ++++S+Wr
  Glyma.03G065700.1.p 713 LQGWKGRIIYALSCWR 728
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.923331708IPR005202Transcription factor GRAS
PfamPF035141.2E-109357728IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MTMNPHLTGF SGSTNQSFPI LQNQRFDNGP RFENLFFDQS RNFDLQCDPN LIPANTPSSS  60
TVTHEEHSPE DCDFSDAVLS YISQILMEED LEDNTCMVQD SLDIQAAEKS FYEVLGEKYP  120
PSPRNTSLMN DGVGGYDFSG DYGNCPDTNG DLMSIFTNQF LPPNSGSFPA HSLHGDGISH  180
SSYNPSNSVE GLVNSSKSII QVPDLNSESE SIWQFQKGVE EASKFLPSAN GLFANLSEPE  240
PKEGKDELSF KVEKEEGEYV NGGSKGRKHP QIDEADDEEN RSSKQAAIYS EPTLRSDMAD  300
IILLHSTGDG KDHFVARREA LQNKTQKSVL PKGQSKASSS GKGRGKKQGG RKEVVDLRTL  360
LFLCAQAVAA DDHRNANELL KHIRQHSTPF GDGNQRLAHI FADGLEARLA GTGSQIYKGL  420
VGKRTSAANY LKAYHLYLAA CPFRKISKFT SNITIRESSA QSMKVHVIDF GIFYGFQWPT  480
FIQRLSWRAG GPPKLRITGI DFPQPGFRPA ERILETGRRL AAYAEAFNVP FEYKAIAKKW  540
DTIQLEELEI DRDEFLVVTC FYRGKNLLDE SVVVDSPRNN FLTLIRRINP KLFIHGIMNG  600
AFDAPFFVTR FREALFHYSS LFDMLETIVP REDWERMLIE KEIFGREALN VIACEGPERV  660
ERPESYKQWQ ARILRAGFVQ QSFDRRTVKM AMEKVRGSYH KDFVIDEDSQ WLLQGWKGRI  720
IYALSCWRPA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4836472926380Protein SCARECROW
5b3h_A1e-4836472925379Protein SCARECROW
5b3h_D1e-4836472925379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G065700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2361700.0AC236170.2 Glycine max clone GM_WBb0073J13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522103.20.0scarecrow-like protein 9
RefseqXP_028224607.10.0scarecrow-like protein 9
RefseqXP_028224608.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A445L8E20.0A0A445L8E2_GLYSO; Scarecrow-like protein 9 isoform A
TrEMBLI1JLK00.0I1JLK0_SOYBN; Uncharacterized protein
STRINGGLYMA03G10320.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein