PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G047600.1.p | ||||||||
Common Name | GLYMA_03G047600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 92aa MW: 10865.8 Da PI: 10.9296 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.7 | 4e-11 | 37 | 63 | 19 | 47 |
TTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqky 47 +G++ W+tIa+ ++ gRt++++k++w+++ Glyma.03G047600.1.p 37 FGKK-WSTIAANLP-GRTDNEIKNYWNTH 63 5777.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.556 | 1 | 68 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-15 | 34 | 81 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.33E-10 | 34 | 78 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-8 | 37 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.02E-6 | 39 | 64 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MWKELPASLG KLLEARYKER EILIRRRRSH HSVTQCFGKK WSTIAANLPG RTDNEIKNYW 60 NTHIKKKLLK MGIDPMTHTH LYAIYHPNVR K* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.160 | 1e-128 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in flowers and at lower levels in rosette leaves and cauline leaves. Expressed at low levels in roots, stems and siliques. {ECO:0000269|PubMed:26139822}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in salt stress response. {ECO:0000305|PubMed:26139822}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G047600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:26139822}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031201 | 1e-125 | KT031201.1 Glycine max clone HN_CCL_73 MYB/HD-like transcription factor (Glyma12g34650.2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015936579.1 | 2e-22 | transcription factor MYB74 | ||||
Refseq | XP_025614815.1 | 2e-22 | transcription factor MYB41 | ||||
Swissprot | Q9M0Y5 | 9e-20 | MYB74_ARATH; Transcription factor MYB74 | ||||
TrEMBL | K7KCX4 | 2e-61 | K7KCX4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G06225.1 | 3e-62 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16895 | 4 | 7 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05100.1 | 4e-22 | myb domain protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G047600.1.p |
Publications ? help Back to Top | |||
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