PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.03G042700.1.p

Common Name

GLYMA_03G042700, LOC102666898

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 508aa MW: 55978.3 Da PI: 7.4492

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G042700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.9	1.6e-31	207	264	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYG K+vkgse+prsYY+Ct+++Cp+kkkvers +++++ei+Y+g+Hnh+k Glyma.03G042700.1.p 207 EDGYNWRKYGEKQVKGSENPRSYYKCTHPSCPTKKKVERSL-EGHITEIVYKGSHNHPK 264 7**************************************.*************85 PP
2	WRKY	100.7	8.8e-32	355	413	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+C +gCpv+k+ver+a+d k+v++tYeg+H h+ Glyma.03G042700.1.p 355 LDDGYRWRKYGQKVVKGNPNPRSYYKCVAPGCPVRKHVERAAHDMKAVITTYEGKHIHD 413 59*******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.9E-27	198	265	IPR003657	WRKY domain
PROSITE profile	PS50811	22.607	201	265	IPR003657	WRKY domain
SuperFamily	SSF118290	3.14E-24	202	265	IPR003657	WRKY domain
SMART	SM00774	1.3E-33	206	264	IPR003657	WRKY domain
Pfam	PF03106	4.7E-24	207	263	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	7.0E-36	340	415	IPR003657	WRKY domain
SuperFamily	SSF118290	8.63E-28	347	415	IPR003657	WRKY domain
PROSITE profile	PS50811	36.713	350	415	IPR003657	WRKY domain
SMART	SM00774	6.5E-36	355	414	IPR003657	WRKY domain
Pfam	PF03106	1.8E-24	356	412	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MSFSFTDLLS TNNNNSLNMD DDPFGLEFAN NFKSASLPLS PSSIYPSSYA EFPPGFVPTS 60 QSLNSHHFFS SQIVPASYTT EQSSSMSYNM RNTSTEGQQG NKEEERNYSD LSFLTKTNHV 120 PLFQSSTTMF QVEPLKKQDT MISSEAAKQT DFSSERTETK PEYPSTQGFS AALASIKPEI 180 QSNSAPGSVH FNSTYAPKSI REQKRSEDGY NWRKYGEKQV KGSENPRSYY KCTHPSCPTK 240 KKVERSLEGH ITEIVYKGSH NHPKPLGRKN GSQSIHQTSS SCTNSGISDQ SVGEEDLEQT 300 SQTSYSGGGD DDLGNEAKRW KGENENDGHS YSSAGSRTVK EPRVVVQTTS EIDILDDGYR 360 WRKYGQKVVK GNPNPRSYYK CVAPGCPVRK HVERAAHDMK AVITTYEGKH IHDVPLGRGN 420 SSYSMNRTSL NNNTNTSTSN VTAPAPIRPS AVTNYSNSAS FTNSLHDTKP PTSASQEPFP 480 MDVLLSPGSI GFAANDLFLQ SFLSKNF*

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MSFSFTDLLS TNNNNSLNMD DDPFGLEFAN NFKSASLPLS PSSIYPSSYA EFPPGFVPTS  60
QSLNSHHFFS SQIVPASYTT EQSSSMSYNM RNTSTEGQQG NKEEERNYSD LSFLTKTNHV  120
PLFQSSTTMF QVEPLKKQDT MISSEAAKQT DFSSERTETK PEYPSTQGFS AALASIKPEI  180
QSNSAPGSVH FNSTYAPKSI REQKRSEDGY NWRKYGEKQV KGSENPRSYY KCTHPSCPTK  240
KKVERSLEGH ITEIVYKGSH NHPKPLGRKN GSQSIHQTSS SCTNSGISDQ SVGEEDLEQT  300
SQTSYSGGGD DDLGNEAKRW KGENENDGHS YSSAGSRTVK EPRVVVQTTS EIDILDDGYR  360
WRKYGQKVVK GNPNPRSYYK CVAPGCPVRK HVERAAHDMK AVITTYEGKH IHDVPLGRGN  420
SSYSMNRTSL NNNTNTSTSN VTAPAPIRPS AVTNYSNSAS FTNSLHDTKP PTSASQEPFP  480
MDVLLSPGSI GFAANDLFLQ SFLSKNF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-37	207	415	8	77	Probable WRKY transcription factor 4
2lex_A	6e-37	207	415	8	77	Probable WRKY transcription factor 4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.30411	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in roots, leaves and flowers, and at lower levels in stems, siliques and seeds. {ECO:0000269\|PubMed:18839316}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-TTGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Involved in defense responses. Required for resistance to the necrotrophic fungal pathogen B.cinerea (PubMed:17059405, PubMed:21990940). Regulates the antagonistic relationship between defense pathways mediating responses to the bacterial pathogen P. syringae and the necrotrophic pathogen B.cinerea (PubMed:17059405). Required for the phytoalexin camalexin synthesis following infection with B.cinerea. Acts as positive regulator of the camalexin biosynthetic genes PAD3 (CYP71B15) and CYP71A13 by binding to their promoters (PubMed:21498677, PubMed:22392279). Acts downstream of MPK3 and MPK6 in reprogramming the expression of camalexin biosynthetic genes, which drives the metabolic flow to camalexin production (PubMed:21498677). Functions with WRKY25 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Functions with WRKY25 and WRKY26 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). The DNA-binding activity of WRKY33 is increased by SIB1 and SIB2 (PubMed:21990940). {ECO:0000269\|PubMed:18839316, ECO:0000269\|PubMed:21336597, ECO:0000269\|PubMed:21498677, ECO:0000269\|PubMed:21990940, ECO:0000269\|PubMed:22392279}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G042700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress (PubMed:18839316). Induced by infection with the necrotrophic fungal pathogen B.cinerea (PubMed:17059405, PubMed:21498677, PubMed:21990940). Induced by infection with the bacterial pathogen P.syringae pv. tomato DC3000 (PubMed:17059405). {ECO:0000269\|PubMed:17059405, ECO:0000269\|PubMed:18839316, ECO:0000269\|PubMed:21498677, ECO:0000269\|PubMed:21990940}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU019554	0.0	EU019554.1 Glycine max WRKY5 (WRKY5) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006576465.1	0.0	probable WRKY transcription factor 33
Refseq	XP_028224365.1	0.0	probable WRKY transcription factor 33
Swissprot	Q8S8P5	1e-101	WRK33_ARATH; Probable WRKY transcription factor 33
TrEMBL	A0A445L706	0.0	A0A445L706_GLYSO; Putative WRKY transcription factor 33
TrEMBL	K7KCS7	0.0	K7KCS7_SOYBN; Uncharacterized protein
STRING	GLYMA03G05220.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1077	34	114
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-100	WRKY DNA-binding protein 33

Link Out ? help Back to Top
Phytozome	Glyma.03G042700.1.p
Entrez Gene	102666898

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Divi UK,Rahman T,Krishna P Gene expression and functional analyses in brassinosteroid-mediated stress tolerance. Plant Biotechnol. J., 2016. 14(1): p. 419-32 [PMID:25973891] Peskan-Berghöfer T, et al. Sustained exposure to abscisic acid enhances the colonization potential of the mutualist fungus Piriformospora indica on Arabidopsis thaliana roots. New Phytol., 2015. 208(3): p. 873-86 [PMID:26075497] Wang C, et al. The Arabidopsis Mediator Complex Subunit16 Is a Key Component of Basal Resistance against the Necrotrophic Fungal Pathogen Sclerotinia sclerotiorum. Plant Physiol., 2015. 169(1): p. 856-72 [PMID:26143252] Wang C, et al. Arabidopsis Elongator subunit 2 positively contributes to resistance to the necrotrophic fungal pathogens Botrytis cinerea and Alternaria brassicicola. Plant J., 2015. 83(6): p. 1019-33 [PMID:26216741] Datta R, et al. Glutathione Regulates 1-Aminocyclopropane-1-Carboxylate Synthase Transcription via WRKY33 and 1-Aminocyclopropane-1-Carboxylate Oxidase by Modulating Messenger RNA Stability to Induce Ethylene Synthesis during Stress. Plant Physiol., 2015. 169(4): p. 2963-81 [PMID:26463088] Daumann M,Fischer M,Niopek-Witz S,Girke C,Möhlmann T Apoplastic Nucleoside Accumulation in Arabidopsis Leads to Reduced Photosynthetic Performance and Increased Susceptibility Against Botrytis cinerea. Front Plant Sci, 2015. 6: p. 1158 [PMID:26779190] Liu S,Bartnikas LM,Volko SM,Ausubel FM,Tang D Mutation of the Glucosinolate Biosynthesis Enzyme Cytochrome P450 83A1 Monooxygenase Increases Camalexin Accumulation and Powdery Mildew Resistance. Front Plant Sci, 2016. 7: p. 227 [PMID:26973671] Jiang Y,Yu D The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance. Plant Physiol., 2016. 171(4): p. 2771-82 [PMID:27268959] Liao CJ,Lai Z,Lee S,Yun DJ,Mengiste T Arabidopsis HOOKLESS1 Regulates Responses to Pathogens and Abscisic Acid through Interaction with MED18 and Acetylation of WRKY33 and ABI5 Chromatin. Plant Cell, 2016. 28(7): p. 1662-81 [PMID:27317674] Birkenbihl RP,Kracher B,Roccaro M,Somssich IE Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity. Plant Cell, 2017. 29(1): p. 20-38 [PMID:28011690] Nguyen CC, et al. Overexpression of oligouridylate binding protein 1b results in ABA hypersensitivity. Plant Signal Behav, 2017. 12(2): p. e1282591 [PMID:28112571] Liu S,Ziegler J,Zeier J,Birkenbihl RP,Somssich IE Botrytis cinerea B05.10 promotes disease development in Arabidopsis by suppressing WRKY33-mediated host immunity. Plant Cell Environ., 2017. 40(10): p. 2189-2206 [PMID:28708934] D'Ambrosio JM, et al. Phospholipase C2 Affects MAMP-Triggered Immunity by Modulating ROS Production. Plant Physiol., 2017. 175(2): p. 970-981 [PMID:28827453] Liu F, et al. Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection. Plant Biotechnol. J., 2018. 16(4): p. 911-925 [PMID:28929638] Crespo-Salvador Ó,Escamilla-Aguilar M,López-Cruz J,López-Rodas G,González-Bosch C Determination of histone epigenetic marks in Arabidopsis and tomato genes in the early response to Botrytis cinerea. Plant Cell Rep., 2018. 37(1): p. 153-166 [PMID:29119291]