PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.03G035200.2.p

Common Name

GLYMA_03G035200, LOC100778833

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Protein Properties

Length: 870aa MW: 96474.7 Da PI: 7

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G035200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.4	5.3e-18	322	421	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k l+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ Glyma.03G035200.2.p 322 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD 410 89************************555567778***********99899999999.*******************876 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 e++l +++++ Glyma.03G035200.2.p 411 -PEGKLIMGFRK 421 .77777777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.3E-29	314	430	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.03E-18	319	422	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.87E-22	320	421	No hit	No description
SMART	SM01019	1.2E-19	322	422	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-15	322	421	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.166	322	423	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.329	551	601	IPR011124	Zinc finger, CW-type
Pfam	PF07496	1.2E-9	556	598	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010030	Biological Process	positive regulation of seed germination
GO:2000034	Biological Process	regulation of seed maturation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence Send to blast
MESRSCMNVA CATSTTIRWR KGWALRSGEF ADLCDKCGSA YEQSTYCDMF HSNDSGWREC 60 TSCDKRLHCG CIASMSQLEL LDTGGVSCIS CARNSGLQPI ANNEKPNGSG TSKVQNVSTQ 120 QQYTSLANQL TVRGMQVGHY AENDGLRCWF KPHNVETDGP SAEMKPEILP SVGELGNTLI 180 SQFHCESNGS SKASKAENCK AETEMRDIYE SLAQTNLSMT LAAPLGNSNP FHSAVVDERE 240 QSKTSPLLLG SRSRHLLPKP PRSTIGTSLE ANAGMVSQIR VARPPAEGRG RNQLLPRYWP 300 RITDQELQQI SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR 360 IQDVKGKEWM FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLIMGFR 420 KATNSTAVQS QKGCSETHLN ALSKKWNSAG GDMNWHSIDM PESRKRDGLP LPPVMVPEKK 480 RTRNIGSKSK RLLIDSQDAL ELKLTWEEAQ DLLRPPPTVK PSIVMIEDHV FEEYEEPPVF 540 GKRSIFVVRS TGVNEQWMQC DSCSKWRKLP VDALIPPKWT CVENLWDQSR CSCAAPNELN 600 PRELDNLLRL NKEFKKQRLA ASQRLALERE SSGLDALANA AILGDDASDS GRTPVVTTTK 660 HPRHRPGCSC IVCIQPPSGK GKHKPTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR 720 NQLSWRTKDE SEVDSTSRHL TPVDGLENEV RVQNELDSRS PDDAVAEAAK GQLDLNCQPD 780 REDVQAGPNS LSMTSLLEEA NLPLETYLKQ NGLTSLITEQ QTNSASNVQA QTTNDSEVKH 840 NEDCGTASVI HAQESSPEEN SGQDKEQNN*

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence Send to blast

MESRSCMNVA CATSTTIRWR KGWALRSGEF ADLCDKCGSA YEQSTYCDMF HSNDSGWREC  60
TSCDKRLHCG CIASMSQLEL LDTGGVSCIS CARNSGLQPI ANNEKPNGSG TSKVQNVSTQ  120
QQYTSLANQL TVRGMQVGHY AENDGLRCWF KPHNVETDGP SAEMKPEILP SVGELGNTLI  180
SQFHCESNGS SKASKAENCK AETEMRDIYE SLAQTNLSMT LAAPLGNSNP FHSAVVDERE  240
QSKTSPLLLG SRSRHLLPKP PRSTIGTSLE ANAGMVSQIR VARPPAEGRG RNQLLPRYWP  300
RITDQELQQI SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR  360
IQDVKGKEWM FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLIMGFR  420
KATNSTAVQS QKGCSETHLN ALSKKWNSAG GDMNWHSIDM PESRKRDGLP LPPVMVPEKK  480
RTRNIGSKSK RLLIDSQDAL ELKLTWEEAQ DLLRPPPTVK PSIVMIEDHV FEEYEEPPVF  540
GKRSIFVVRS TGVNEQWMQC DSCSKWRKLP VDALIPPKWT CVENLWDQSR CSCAAPNELN  600
PRELDNLLRL NKEFKKQRLA ASQRLALERE SSGLDALANA AILGDDASDS GRTPVVTTTK  660
HPRHRPGCSC IVCIQPPSGK GKHKPTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR  720
NQLSWRTKDE SEVDSTSRHL TPVDGLENEV RVQNELDSRS PDDAVAEAAK GQLDLNCQPD  780
REDVQAGPNS LSMTSLLEEA NLPLETYLKQ NGLTSLITEQ QTNSASNVQA QTTNDSEVKH  840
NEDCGTASVI HAQESSPEEN SGQDKEQNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	2e-69	300	430	2	132	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	695	706	KRRFKTLMMRKK
2	695	708	KRRFKTLMMRKKKR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.20566	0.0	hypocotyl

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269\|PubMed:17158584, ECO:0000269\|PubMed:17267611}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G035200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006576447.1	0.0	B3 domain-containing transcription repressor VAL2 isoform X2
Swissprot	Q5CCK4	0.0	VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBL	K7KCN1	0.0	K7KCN1_SOYBN; Uncharacterized protein
STRING	GLYMA03G04330.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Link Out ? help Back to Top
Phytozome	Glyma.03G035200.2.p
Entrez Gene	100778833

Publications ? help Back to Top
Jia H,McCarty DR,Suzuki M Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression. Plant Physiol., 2013. 163(3): p. 1293-305 [PMID:24043445] Chhun T, et al. HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth. Plant Cell Physiol., 2016. 57(8): p. 1689-706 [PMID:27335347] Yuan W, et al. A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis. Nat. Genet., 2016. 48(12): p. 1527-1534 [PMID:27819666] Li C,Cui Y A DNA element that remembers winter. Nat. Genet., 2016. 48(12): p. 1451-1452 [PMID:27898079]