PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G031800.1.p
Common NameGLYMA_03G031800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 733aa    MW: 81292.9 Da    PI: 5.9836
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G031800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS320.72.9e-983767313374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          ++L++ Ae +++g+   aq +Larl+++ sp g+p+qR+a+y++eAL + l++   +  + ++ s+    + + ++ a+k fse+sP+l+
  Glyma.03G031800.1.p 376 DQLYKTAELIEAGNPVHAQGILARLNHQLSPIGRPFQRAAFYMKEALMSLLHS---NAHSFMAFSPI---SFIFKIGAYKSFSEISPVLQ 459
                          689*************************************************9...44444445555...59****************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                          f+++t+Nqa+ eave+++r+H+iDfdi+ G+QW +++q++a R++g+psl++T+++sp++ ++ el+ t+e+L ++A+ ++v+fefnvl 
  Glyma.03G031800.1.p 460 FANFTCNQALIEAVERSDRIHVIDFDIGFGVQWSSFMQEIALRSSGAPSLKVTAIVSPSTCDEVELNFTRENLIQYAKDINVSFEFNVLS 549
                          *****************************************************************************************9 PP

                 GRAS 183 akrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                           ++l++ +   L ++  +Ea++Vn+ ++ ++ +      +s  ++vL++vk+l+Pkvvv  ++ +d  + ++ + +++ l++ysal++sl
  Glyma.03G031800.1.p 550 IESLNSPSCPLLgKFFDNEAIVVNMPVSSFTNY------PSLFPSVLHFVKQLRPKVVVTLDRICDQMDVPLPTNVVHVLQCYSALLESL 633
                          99999999999967788**********888877......555568********************************************* PP

                 GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                          +a    + +  +k+Er++++++i++++   +      +e+l  Wr+ ++++GF+p ++s+++++qa++l+++ +++g++ve +  slvl+
  Glyma.03G031800.1.p 634 DAV-NVNLDVLQKIERHFIQPAIKKIILGHHHF----QEKLPPWRNLFMQSGFSPFTFSNFTEAQAECLVQRAPVRGFHVERKPSSLVLC 718
                          665.3466999****************998887....89*************************************************** PP

                 GRAS 362 WkdrpLvsvSaWr 374
                          W++++L+svS Wr
  Glyma.03G031800.1.p 719 WQKKELISVSTWR 731
                          ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.435348711IPR005202Transcription factor GRAS
PfamPF035141.0E-95376731IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MKVMPLPFEE FQGKGVLDFS SASDSFSVLL HNPQPKWTID KEDYCYVGSI TEPTSVLGSR  60
RSLSPPTSSS TMSSSLGSSN NSTSKGGGGT SANTTNNPTP PSDYNNNNPP QESSPEKCGI  120
RMEDWECQDQ SILRLIMGDV EDPSAGLSKL LQSTACGSQS ADFNAGFGVV DQQGLNMNMN  180
MNMVGGNIDP NYPAGFPFIA ENMDGQNAKA GSGTGQVSES VVFSANNPLM VSSSVSPGVF  240
TSQQQQQEFG VVDEKPQVIN PQFMLNQNQV QFSDNPSFFL PLMYPQVQEQ QVFSQHQAKH  300
HLFDTIGHNF QAPRLSLLDS GQEVFGRRQQ TQLPLFPHHM QQQQQQQSMV MPSTKQQKVS  360
STGDDASHQL QQAIFDQLYK TAELIEAGNP VHAQGILARL NHQLSPIGRP FQRAAFYMKE  420
ALMSLLHSNA HSFMAFSPIS FIFKIGAYKS FSEISPVLQF ANFTCNQALI EAVERSDRIH  480
VIDFDIGFGV QWSSFMQEIA LRSSGAPSLK VTAIVSPSTC DEVELNFTRE NLIQYAKDIN  540
VSFEFNVLSI ESLNSPSCPL LGKFFDNEAI VVNMPVSSFT NYPSLFPSVL HFVKQLRPKV  600
VVTLDRICDQ MDVPLPTNVV HVLQCYSALL ESLDAVNVNL DVLQKIERHF IQPAIKKIIL  660
GHHHFQEKLP PWRNLFMQSG FSPFTFSNFT EAQAECLVQR APVRGFHVER KPSSLVLCWQ  720
KKELISVSTW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2838273027378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.106830.0cotyledon| flower| root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G031800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576434.10.0scarecrow-like protein 6
RefseqXP_028224252.10.0scarecrow-like protein 6
TrEMBLA0A0B2S3A60.0A0A0B2S3A6_GLYSO; Scarecrow-like protein 6
TrEMBLI1JKU20.0I1JKU2_SOYBN; Uncharacterized protein
STRINGGLYMA03G03760.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-125GRAS family protein