PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G016600.5.p
Common NameGLYMA_03G016600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 762aa    MW: 83520.7 Da    PI: 6.4316
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G016600.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.57.2e-2162117156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k
  Glyma.03G016600.5.p  62 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 117
                          688999***********************************************999 PP
2START211.62.9e-662654891206
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          ela++a++elvk+a+ +ep+W++ +    e++n +e++++f++s +     + +ea+r+ g+v+ ++  lve+l+d++ +W e+++    
  Glyma.03G016600.5.p 265 ELALAAMDELVKMAQTGEPLWMRNVeggrEILNHEEYVRNFTPSIGlrpngFVSEASRENGMVIINSLALVETLMDSN-RWAEMFPciia 353
                          5899****************************************99********************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          + +t+evissg      galqlm aelq+lsplvp R++ f+R+++q+ +g w++vdvS+ds ++ +  + +v +++lpSg+++++++ng
  Glyma.03G016600.5.p 354 RTSTTEVISSGingtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGLWAVVDVSIDSIRESSGAPTFVNGRRLPSGCVVQDMPNG 443
                          *****************************************************************999********************** PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +skvtwveh++++++++h+l+r+l++sg+ +ga++wvatlqrqce+
  Glyma.03G016600.5.p 444 YSKVTWVEHAEYEESQVHQLYRPLLSSGMGFGAQRWVATLQRQCEC 489
                          ********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.77E-2144119IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-2249119IPR009057Homeodomain-like
PROSITE profilePS5007117.21659119IPR001356Homeobox domain
SMARTSM003891.7E-1760123IPR001356Homeobox domain
CDDcd000862.56E-1861119No hitNo description
PfamPF000462.0E-1862117IPR001356Homeobox domain
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PROSITE profilePS5084845.039256492IPR002913START domain
SuperFamilySSF559613.3E-33258489No hitNo description
CDDcd088752.16E-126260488No hitNo description
SMARTSM002349.2E-51265489IPR002913START domain
PfamPF018525.2E-58265489IPR002913START domain
Gene3DG3DSA:3.30.530.203.0E-4369458IPR023393START-like domain
SuperFamilySSF559612.75E-22513685No hitNo description
SuperFamilySSF559612.75E-22714754No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MKQKQQTSID GQEDVNRMAE NSFEPNGLRR SREDEHESRS GSDNMDGGSG DEHDAADNPP  60
RKKRYHRHTP QQIQELEALF KECPHPDEKQ RLELSRRLCL ETRQVKFWFQ NRRTQMKTQL  120
ERHENTLLRQ ENDKLRAENM SIRDAMRNPM CSNCGGLAII GEISLEEQHL RIENARLKDE  180
LDRVCALAGK FLGRPVSSLP SLELGMGGNG FAGMPAATLP LAQDFAMGMS VSMNNNALAM  240
VSPPTSTRPA AAGFDRSVER SMFLELALAA MDELVKMAQT GEPLWMRNVE GGREILNHEE  300
YVRNFTPSIG LRPNGFVSEA SRENGMVIIN SLALVETLMD SNRWAEMFPC IIARTSTTEV  360
ISSGINGTRN GALQLMHAEL QVLSPLVPVR EVNFLRFCKQ HAEGLWAVVD VSIDSIRESS  420
GAPTFVNGRR LPSGCVVQDM PNGYSKVTWV EHAEYEESQV HQLYRPLLSS GMGFGAQRWV  480
ATLQRQCECL AILMSSAAPS RDHSAGGRRS MVKLAQRMTN NFCAGVCAST VHKWNKLNAA  540
ANVDEDVRVM TRKSVDDPGE PPGIVLSAAT SVWLPVSPHR LFDFLRDERL RSEWDILSNG  600
GPMQEMAHIA KGQDHGNAVS LLRASAINSN QSSMLILQET CIDAAGSLVV YAPVDIPAMH  660
VVMNGGDSAY VALLPSGFAI VPDGPGSRGP HQNGPTSSTT TTTNGGDNGV TRVSGSLLTV  720
AFQILVNSLP TAKLTVESVE TVNNLISCTV QKIKAALHCE S*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G016600.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576359.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
RefseqXP_028224092.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A0R0KIV40.0A0A0R0KIV4_SOYBN; Uncharacterized protein
STRINGGLYMA03G01860.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]