PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G013300.1.p
Common NameGLYMA_03G013300, LOC100798658
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 274aa    MW: 30933.9 Da    PI: 7.5771
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G013300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEde+lv+++++ Gg+ +W++ ++  g+ R++k+c++rw +yl
  Glyma.03G013300.1.p 14 KGPWTAEEDEILVNYINKNGGHgSWRSLPNLAGLLRCGKSCRLRWTNYL 62
                         79*******************9***********99************97 PP
2Myb_DNA-binding461.2e-1468113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T e+++l+++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Glyma.03G013300.1.p  68 RGSFTLEDEKLIIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
                          899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-22565IPR009057Homeodomain-like
PROSITE profilePS5129415.668962IPR017930Myb domain
SuperFamilySSF466893.74E-2810109IPR009057Homeodomain-like
SMARTSM007178.1E-121364IPR001005SANT/Myb domain
PfamPF002491.7E-141462IPR001005SANT/Myb domain
CDDcd001674.35E-81662No hitNo description
PROSITE profilePS5129423.53163117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2466118IPR009057Homeodomain-like
SMARTSM007171.3E-1367115IPR001005SANT/Myb domain
PfamPF002491.3E-1368113IPR001005SANT/Myb domain
CDDcd001672.17E-970113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGRKPCCDKM GLKKGPWTAE EDEILVNYIN KNGGHGSWRS LPNLAGLLRC GKSCRLRWTN  60
YLRPDIKRGS FTLEDEKLII QLHGILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLICM  120
GLDPQTHQPL ASPHNPNDKA HASSSTSTRH MAQWESARLE AEARLSREPH LYYNNNKTDS  180
DYFLRIWNSD LGESFRDVHK LESSIKCESQ SATTDLASLT PASIVKEEFL WGVKKIVSDS  240
SSSSSELHHD SCDTSLQLLL DFPMNNDMSF LEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27121175108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G013300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150425e-97AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521908.10.0transcription factor MYB41
SwissprotQ9M2D91e-120MYB17_ARATH; Transcription factor MYB17
TrEMBLI1JKB20.0I1JKB2_SOYBN; Uncharacterized protein
STRINGGLYMA03G01540.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-120myb domain protein 17