PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G007900.1.p | ||||||||
Common Name | GLYMA_03G007900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 462aa MW: 50323.4 Da PI: 7.1143 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.1 | 2.2e-39 | 102 | 161 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ Glyma.03G007900.1.p 102 PDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 161 7899******************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-29 | 90 | 159 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.5E-32 | 104 | 160 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.425 | 106 | 160 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 108 | 144 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MSQTEKDPGI RLFGRKIPVP ECQIPANSGP KDACSSIMKT ELGIPSECGE NTEQQENSSD 60 SRDSKQESQH KLQENEPIVN PKPAEDDMET GSSDQDKVLK KPDKILQCPR CNSLDTKFCY 120 FNNYNVNQPR HFCKNCQRYW TAGGTMRNVP IGAGRRKNKH LASQYRHIIV TSDGIPTSRL 180 ETTDSVNAGA FLHPPISQLG ESMDSMLNLR DQRRCVDASS ISCVEYRGEP SLYGSSVTTN 240 GAQGSELSEH SPSNWLQCYP VPPWVLPYPG WNNVNSMEAV HRSSAPMCNP YNNTGPAAMQ 300 WCPTPMVAIP GMCPPSIPLQ FVPPSYWSGT QLWNAGTGTV SIGSNACLSP SSSTSNSCCS 360 GNGSPTLGKH TRDTVCTNEE KSEKCVSVPK TIRIDAPNEA SKSPIRATLA IKPDMQQFVS 420 NGDILKKNEP KEGKDRMLGA SQILEANPAA ISRAHAFQEG L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G007900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093966 | 0.0 | BT093966.1 Soybean clone JCVI-FLGm-18A13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028223998.1 | 0.0 | cyclic dof factor 2-like | ||||
TrEMBL | A0A0R0KD59 | 0.0 | A0A0R0KD59_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G01030.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3502 | 31 | 65 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 9e-61 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G007900.1.p |