PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G007500.1.p
Common NameGLYMA_03G007500, Glyma03g00980.1, LOC100776882
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 406aa    MW: 44780.4 Da    PI: 5.8248
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G007500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-17130175147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ede+l+++v+q+G+ +W++Ia+ +  gR++k+c++rw++ 
  Glyma.03G007500.1.p 130 RGHWRPAEDEKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 175
                          899*****************************.***********996 PP
2Myb_DNA-binding54.92e-17182225146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Glyma.03G007500.1.p 182 RRSFSEEEEERLLTAHRMYGNK-WAMIARLFP-GRTDNAVKNHWHV 225
                          6789******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.309125176IPR017930Myb domain
SMARTSM007173.3E-15129178IPR001005SANT/Myb domain
PfamPF002491.3E-16130175IPR001005SANT/Myb domain
SuperFamilySSF466892.21E-28130223IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-26131183IPR009057Homeodomain-like
CDDcd001673.28E-14133174No hitNo description
PROSITE profilePS5129426.608177231IPR017930Myb domain
SMARTSM007174.9E-15181229IPR001005SANT/Myb domain
PfamPF002492.3E-14182224IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-20184229IPR009057Homeodomain-like
CDDcd001672.13E-7193224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MSSSQHLNNV GEDSSSRDMS FFPPSSRYVG SSQTQTPPLS LSHGNGVEGS NSNPEMGLLI  60
FASTVFQQPQ ECRGTKRAID EEEEEEEEDE EEEEGVDEIE NNKNLCLKLG GDEAQAAKSS  120
ASGKTKLCAR GHWRPAEDEK LKELVAQYGP QNWNLIAENL EGRSGKSCRL RWFNQLDPRI  180
NRRSFSEEEE ERLLTAHRMY GNKWAMIARL FPGRTDNAVK NHWHVIMARR QREHSSRVYR  240
RRKLVVNETV LPKGLNLTLS NNNAGSESTI SSTIDESAST CTNLSLTPPS SAKVTPPFGR  300
LFDHHGPSQN HHQAFGSLIG QAIGDVSFNK KFCGASWNGV AYKKAEQVGK LKGVDQSNFS  360
DANSEVSVSE SVATNRSNVS ISEESETVGD KINMPFIDFL GVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-321302307107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, expressed in anther vacuolar tissue from stage 9 to stage 13. {ECO:0000269|PubMed:20305120}.
UniprotTISSUE SPECIFICITY: Expressed in root vascular tissue, primordia of lateral roots, leaf collar, and veins of lemma, palea and pistil. {ECO:0000269|PubMed:20305120}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G007500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311830.0KT031183.1 Glycine max clone HN_CCL_37 MYB/HD-like transcription factor (Glyma03g00980.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576303.10.0transcription factor MYB54
SwissprotQ5NBM89e-73CSA_ORYSJ; Transcription factor CSA
TrEMBLI1JK610.0I1JK61_SOYBN; MYB/HD-like transcription factor
STRINGGLYMA03G00980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.11e-66myb domain protein 117
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]
  9. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]