PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G306300.1.p
Common NameGLYMA_02G306300, LOC100782726
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 508aa    MW: 55648.4 Da    PI: 6.6523
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G306300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.41.1e-26113169259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +DgynWrKYGqK+vkg+ef rsYY+Ct+++C +kk++++s+ ++++++ +  g+Hnh+
  Glyma.02G306300.1.p 113 KDGYNWRKYGQKHVKGNEFIRSYYKCTHPNCLAKKQLQQSN-NGHITDSICIGQHNHP 169
                          7***************************************9.***************8 PP
2WRKY103.71e-32287345159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dgy+WrKYGqK vkg+++prsYYrC+ +gCpvkk+ver+++d kvv++tYeg+H+he
  Glyma.02G306300.1.p 287 VNDGYRWRKYGQKLVKGNTNPRSYYRCSNPGCPVKKHVERASHDSKVVITTYEGQHDHE 345
                          58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-24105171IPR003657WRKY domain
SuperFamilySSF1182901.44E-22107171IPR003657WRKY domain
PROSITE profilePS5081119.336107171IPR003657WRKY domain
SMARTSM007743.0E-29112170IPR003657WRKY domain
PfamPF031063.4E-21113169IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-35272347IPR003657WRKY domain
SuperFamilySSF1182901.31E-28279347IPR003657WRKY domain
PROSITE profilePS5081134.635282347IPR003657WRKY domain
SMARTSM007742.4E-37287346IPR003657WRKY domain
PfamPF031069.7E-26288344IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MVSSDKSADQ NIPSDKLQQR VSLDSDTTLS QGHDTKNDLS KPEEASILSI VVKNEEGKDS  60
DAIACALESD QEGSTCSLPL EKPLQNPDTL SHELPRLQSS QEFPSIIREK VSKDGYNWRK  120
YGQKHVKGNE FIRSYYKCTH PNCLAKKQLQ QSNNGHITDS ICIGQHNHPR PQLNSTVSVE  180
CVLPVVEQAP HKSSLATVED KASVEHGCMP QQIQPLQSFP PAKVSPVNKL NASHLSLTKA  240
KNQVHDNEEP ESKRLKKDNT NPDVTRVDMS TRESRVVVQT SSEVDLVNDG YRWRKYGQKL  300
VKGNTNPRSY YRCSNPGCPV KKHVERASHD SKVVITTYEG QHDHEIPPGR TVTQNAATNA  360
RTTASNGKAG TKSEGNITDD TGERSGLGSA SRLTEQLNGE SITKSKAGDM VEFCVISLSN  420
EGPEIKLSEQ QQQKDNSATK DDSVSNDVIS HSSSGVLCRS NEQLKGEVKP ISEGSKDCLN  480
VVAVHDTRST ESEFNKQSTA DAEPVQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-37274349176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.77990.0cotyledon| leaf| root| seed coat| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G306300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518571.10.0WRKY transcription factor 1
RefseqXP_028222491.10.0WRKY transcription factor 1-like
RefseqXP_028222500.10.0WRKY transcription factor 1-like
SwissprotQ9SI371e-78WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A445LWG80.0A0A445LWG8_GLYSO; WRKY transcription factor 1 isoform A
TrEMBLI1JJR00.0I1JJR0_SOYBN; Uncharacterized protein
STRINGGLYMA02G47650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.23e-79zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]