PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.02G306200.1.p | ||||||||
Common Name | GLYMA_02G306200, LOC100796496 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 542aa MW: 60726.6 Da PI: 6.1054 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 458.9 | 3e-140 | 171 | 541 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++ L++cA+a+s++dl +aq+l+ +l++++s +gdp+qRl ay++e+L arla s+s++yk+l+++e + s+e l+++++++ev+P+ Glyma.02G306200.1.p 171 LKHILIACAKAISDDDLLMAQWLMDELRQMVSVSGDPFQRLGAYMLEGLVARLAASGSSIYKSLRCKEPE---SAELLSYMHILYEVCPY 257 6899*****************************************************************9...9**************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 +kf+++ aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s + l+ +g+rL+k+Ae+++vpfef Glyma.02G306200.1.p 258 FKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLHIVGRRLSKLAEHFKVPFEF 347 ***********************************************************998899999********************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 ++ +a + d++l++L v+pgEalaVn++++lh+++desvs++++rd++L+lv+slsPkvv++veqe+++n++ F+ rfle+l+yy+a+f Glyma.02G306200.1.p 348 HA-AAISGCDVQLHNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVRSLSPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMF 436 **.88899********************************************************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 +s++++l+re++eri+vE+++l+r++vn++aceg er+erhe l+kWr+r+ +aGF+p+pls+ ++ ++k ll++++++ yr++e++g+l Glyma.02G306200.1.p 437 ESIDVTLSREHKERINVEQHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSDR-YRLQERDGAL 525 *****************************************************************************66.********** PP GRAS 359 vlgWkdrpLvsvSaWr 374 +lgW++r Lv+ +aW+ Glyma.02G306200.1.p 526 YLGWMNRDLVASCAWK 541 ***************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 70.561 | 145 | 522 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-137 | 171 | 541 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 542 aa Download sequence Send to blast |
MQASEQHRNS SMYYQPLQQI EAYCLPQYRT LNPQLYYHDG GHGTQFSTPS SSELYCTLES 60 SSVALYNSPS TVSFSPNGSP ISQQDSQSYP PDQYHSPENT YGSPMSGSCI TDDLSSFNLK 120 HKLRELESVM LGPDSDNLDS YDSAISNGNN FVPLEMDGWK QTMVAISSKN LKHILIACAK 180 AISDDDLLMA QWLMDELRQM VSVSGDPFQR LGAYMLEGLV ARLAASGSSI YKSLRCKEPE 240 SAELLSYMHI LYEVCPYFKF GYMSANGAIA EAMKDEDRVH IIDFQIGQGS QWITLIQAFA 300 ARPGGPPHIR ITGIDDSTSA YARGGGLHIV GRRLSKLAEH FKVPFEFHAA AISGCDVQLH 360 NLGVRPGEAL AVNFAFMLHH MPDESVSTQN HRDRLLRLVR SLSPKVVTLV EQESNTNTAA 420 FFPRFLETLD YYTAMFESID VTLSREHKER INVEQHCLAR DLVNIIACEG VERVERHEVL 480 GKWRSRFAMA GFTPYPLSSL VNGTIKKLLE NYSDRYRLQE RDGALYLGWM NRDLVASCAW 540 K* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-62 | 178 | 540 | 26 | 378 | Protein SCARECROW |
5b3h_A | 5e-62 | 178 | 540 | 25 | 377 | Protein SCARECROW |
5b3h_D | 5e-62 | 178 | 540 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.17672 | 0.0 | cotyledon| hypocotyl| leaf| root| seed coat| somatic embryo| stem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.02G306200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003519666.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_003519667.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_006575744.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_028222456.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_028222466.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_028222477.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A0B2SGK3 | 0.0 | A0A0B2SGK3_GLYSO; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | I1JJQ8 | 0.0 | I1JJQ8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G47640.4 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1653 | 34 | 97 | Representative plant | OGRP1409 | 14 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.02G306200.1.p |
Entrez Gene | 100796496 |
Publications ? help Back to Top | |||
---|---|---|---|
|