PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G303800.8.p

Common Name

GLYMA_02G303800, LOC102664020

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YA

Protein Properties

Length: 289aa MW: 32037.1 Da PI: 8.2582

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G303800.8.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.6	7.7e-32	120	176	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF Glyma.02G303800.8.p 120 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAIRRARGNGGRF 176 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.0E-34	118	179	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.745	119	179	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.3E-27	121	176	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.3E-23	122	144	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	124	144	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.3E-23	153	176	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MQSKSETANQ LRSDPHSFTP NNAYSEPWWR GIQYNPVPQA MLGVNASNSS SLERPNGDSE 60 SSEEDDDATK ESQPTAPNQS GNYGQDHQAM QHSSSSAPLG YTPFIGMPHA RMALPLEMAQ 120 EPVYVNAKQY QGILRRRQAR AKAELEKKLI KVRKPYLHES RHQHAIRRAR GNGGRFAKKT 180 EVEASNHMNK EKDMGTGQVP LSRSISSSGF GSLPSDSAET WNSPSVQQDA RGSQVHERFE 240 ERNYANVLQS SSTFCLHSGE RVEEGDCSGQ QRGSILSEHT SQRRLAIQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-18	120	188	2	69	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.60632	0.0	cotyledon\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in inflorescence, stems, flowers and siliques. {ECO:0000269\|PubMed:11867211}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G303800.8.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095457	0.0	BT095457.1 Soybean clone JCVI-FLGm-25M11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006575727.1	0.0	nuclear transcription factor Y subunit A-2 isoform X2
Refseq	XP_028222189.1	0.0	nuclear transcription factor Y subunit A-9-like isoform X2
Swissprot	Q945M9	1e-56	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A0R0L3T4	0.0	A0A0R0L3T4_SOYBN; Uncharacterized protein
STRING	GLYMA02G47380.5	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	6e-56	nuclear factor Y, subunit A9

Link Out ? help Back to Top
Phytozome	Glyma.02G303800.8.p
Entrez Gene	102664020

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]