PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G303800.5.p
Common NameGLYMA_02G303800, LOC102664020
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 308aa    MW: 34099.5 Da    PI: 7.4167
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G303800.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.48.6e-32139195158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF
  Glyma.02G303800.5.p 139 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAIRRARGNGGRF 195
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-34137198IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.745138198IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.5E-27140195IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.4E-23141163IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860143163IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.4E-23172195IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MQSKSETANQ LRSDPHSFTP NNAYSEPWWR GIQYNPVPQA MLGVNASNSS SLERPNGDSE  60
SSEEDDDATK ESQPTAPNQS GNYGQDHQAM QHSSSSAPLV RDDCLTQAPQ VELVGHSIGY  120
TPFIGMPHAR MALPLEMAQE PVYVNAKQYQ GILRRRQARA KAELEKKLIK VRKPYLHESR  180
HQHAIRRARG NGGRFAKKTE VEASNHMNKE KDMGTGQVPL SRSISSSGFG SLPSDSAETW  240
NSPSVQQDAR GSQVHERFEE RNYANVLQSS STFCLHSGER VEEGDCSGQQ RGSILSEHTS  300
QRRLAIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18139207269NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.606320.0cotyledon| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G303800.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954570.0BT095457.1 Soybean clone JCVI-FLGm-25M11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001276187.10.0nuclear transcription factor Y subunit A-2
RefseqXP_006575723.10.0nuclear transcription factor Y subunit A-2 isoform X1
RefseqXP_006575724.10.0nuclear transcription factor Y subunit A-2 isoform X1
RefseqXP_006575726.10.0nuclear transcription factor Y subunit A-2 isoform X1
RefseqXP_028222154.10.0nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_028222164.10.0nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_028222173.10.0nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_028222181.10.0nuclear transcription factor Y subunit A-1-like isoform X1
TrEMBLA0A0B2SI460.0A0A0B2SI46_GLYSO; Nuclear transcription factor Y subunit A-9
TrEMBLC6TD070.0C6TD07_SOYBN; Uncharacterized protein
STRINGGLYMA02G47380.50.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-56nuclear factor Y, subunit A9