PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G297400.1.p
Common NameGLYMA_02G297400, LOC100816583
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 589aa    MW: 63538.3 Da    PI: 7.4798
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G297400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.64.4e-32233290260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Glyma.02G297400.1.p 233 DDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 290
                          8****************************************.***************85 PP
2WRKY106.21.7e-33407465159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Glyma.02G297400.1.p 407 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 465
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.996227291IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-27227291IPR003657WRKY domain
SuperFamilySSF1182903.01E-25229291IPR003657WRKY domain
SMARTSM007742.3E-34232290IPR003657WRKY domain
PfamPF031067.9E-25233289IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37392467IPR003657WRKY domain
SuperFamilySSF1182902.09E-29399467IPR003657WRKY domain
PROSITE profilePS5081138.825402467IPR003657WRKY domain
SMARTSM007743.1E-39407466IPR003657WRKY domain
PfamPF031063.6E-26408465IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MDAAATNSGE PRPSSELQTT GESEDPNRSG SGQNSTARYK LMSPAKLPIS RSPCITIPPG  60
LSPTSFLESP VLLSNMKVEA SPTTGSLRKL QQTVHGSMAS AASATFPVTT ACFNTNTVDA  120
RKSSFFEFKP LNRSNKVPAD FNNHVSKQST QVEGPGKAQS FASSPLVESE ITVPSNELSL  180
SSPVQMVSSS ASAPVDVDLD EINHKGNTAT GLQASHVEVR GSGLSVAAEK TSDDGYNWRK  240
YGQKLVKGSE FPRSYYKCTH PNCEVKKLFE RSHDGQITEI VYKGTHDHPK PQSSCRYSTG  300
TVMYIQGERS DKASLAGRDD KASTMYGQVS HAAEPNSTPE SSPVATNDDG LEGAGFVSNR  360
NNEEVDDDDP FSKRRKMELG NVDITPVVKP IREPRVVVQT LSEVDILDDG YRWRKYGQKV  420
VRGNPNPRSY YKCTNAGCPV RKHVERASHD PKAVITTYEG KHNHDVPAAR NSSHDMAVPA  480
ATAGGQTRIK LEESDTISLD LGMGISSAAE HRSNGQGKML HSELGETQTH ASNSNFKFVH  540
TTSAPVYFGV LNNSSNPYGS RDNRSDGPSL NHSSYPCPQS MGRILLGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37233468878Probable WRKY transcription factor 4
2lex_A1e-37233468878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.605210.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G297400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753500.0EU375350.1 Glycine max transcription factor (WRKY3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519618.10.0probable WRKY transcription factor 20 isoform X1
RefseqXP_028221428.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A445LW230.0A0A445LW23_GLYSO; Putative WRKY transcription factor 20 isoform A
TrEMBLI1JJG70.0I1JJG7_SOYBN; Uncharacterized protein
STRINGGLYMA02G46690.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein