PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G296600.1.p
Common NameGLYMA_02G296600, LOC100812481
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 658aa    MW: 71840 Da    PI: 7.3394
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G296600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.2e-08262282526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ GtC+ Gd+C +aHg
  Glyma.02G296600.1.p 262 PCPEFRK-GTCQKGDSCEYAHG 282
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.13E-1322151IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-1424154IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.79669152IPR020683Ankyrin repeat-containing domain
SMARTSM002484869102IPR002110Ankyrin repeat
PfamPF127963.1E-669138IPR020683Ankyrin repeat-containing domain
CDDcd002042.23E-1071147No hitNo description
PROSITE profilePS5008811.194107142IPR002110Ankyrin repeat
SMARTSM002480.0039107139IPR002110Ankyrin repeat
PROSITE profilePS5010313.666257284IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5257283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-5262283IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5262282IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869292316IPR000571Zinc finger, CCCH-type
SMARTSM0035637292315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MCSDSKSKLL SSPTLVMEDG LYNNSVLLEL SASDDFEAFK REVDEKGLDV NEAGLWYGRR  60
IGSKKMGSET RTPLMIASLF GSAKVLNCIL LEKKGGGVDV NRVCGSDRAT ALHCAVAGGS  120
ESSLEIVKLL LDAGADAECL DASGNKPVNL IAPAFDSLSK SRRKAMEMFL RGGGERDDEL  180
MSQEIQERKE AISDNKKEYP VDISLPDINN GVYGTDDFRM YNFKVKPCSR AYSHDWTECP  240
FVHPGENARR RDPRKYPYSC VPCPEFRKGT CQKGDSCEYA HGVFESWLHP AQYRTRLCKD  300
ETGCARKVCF FAHKPEELRP VYASTGSAMP SPKSYSASGL DMTAMSPLAL SSTSLPMPTV  360
STPPMSPLTA SSPKSGSLWQ NKINLTPPSL QLPGSRLKAA LSARDLEMEM ELLGLESPAR  420
HHHHQQQQQQ QLIEEIARIS SPSFRSKEFN RIGDLNPTNL DDLLLASADP SVLSQLQSGL  480
QMRQSMNNHL RASYPSNVPS SPVRKPSSFG FDSSAAVATA MMNSRSAAFA KRSQSFIDRG  540
AAATHHHLGG MSSPSNPSCR VSSTLSGWSS PTGKLDWGVN GDELNKLRKS ASFGFRNSGV  600
TASSSSSPIA QPEFGTEQDV SWVHSLVKDV PSERSEKQQY DHLSKEMLLS PWVEATI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.255090.0epicotyl| hypocotyl| leaf| meristem| root| seed coat| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G296600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311570.0KT031157.1 Glycine max clone HN_CCL_209 C3H-type 1 Zn transcription factor (Glyma14g01990.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519610.10.0zinc finger CCCH domain-containing protein 29
RefseqXP_028221329.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A0B2SHQ80.0A0A0B2SHQ8_GLYSO; Zinc finger CCCH domain-containing protein 29
TrEMBLI1JJF90.0I1JJF9_SOYBN; Uncharacterized protein
STRINGGLYMA02G46610.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein