PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G293400.1.p | ||||||||
Common Name | GLYMA_02G293400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 421aa MW: 46036.5 Da PI: 6.0187 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.5 | 1.9e-30 | 231 | 289 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg++ pr+YYrCt++ gCpv+k+v+r+aed +v+++tYeg+Hnh+ Glyma.02G293400.1.p 231 ADGCQWRKYGQKMAKGNPWPRAYYRCTMStGCPVRKQVQRCAEDRSVLITTYEGQHNHP 289 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-32 | 215 | 291 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.872 | 225 | 291 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-27 | 227 | 291 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.0E-37 | 230 | 290 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-26 | 232 | 289 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MEPTWNDAIV NVSNSSDPIM SFRGTPLVMD ELDFFAQKRK VSANDDDHQR VEDLHVDTSL 60 DLLTKNDTDV NNRSTEEDAA LETMDDKSNE VNNNCNTLRM QLVKLTQKHH SHGNNGVIGE 120 KEDMVPRSFL DIGVAEKDEP NSQQSSEGKL RESKSMVELG HGKDIAVLEA YKLDSTAGRE 180 STKARMEGRQ ISTEQEFSNK VPRLDPASET MSMIKKARVS VRAKSYSSMI ADGCQWRKYG 240 QKMAKGNPWP RAYYRCTMST GCPVRKQVQR CAEDRSVLIT TYEGQHNHPL PPTTSVAASM 300 PSILESASLP CSRNMATLSA SAPFPTITLD LTQNATNSSQ LQRELPLGQL GLLSPLLAHK 360 FMSVPKIFGQ GMDTNSSFAN ILNAATADPN FTAALVAAIT SVMGTSHSNT NATNSTSGDE 420 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-24 | 217 | 292 | 1 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G293400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028185357.1 | 0.0 | probable WRKY transcription factor 31 | ||||
TrEMBL | A0A0R0LA20 | 0.0 | A0A0R0LA20_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G46280.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13913 | 12 | 22 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 9e-75 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G293400.1.p |