PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G287700.1.p | ||||||||
Common Name | GLYMA_02G287700, LOC100782733 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28340.8 Da PI: 9.705 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.1 | 3.6e-31 | 27 | 76 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+ Glyma.02G287700.1.p 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 76 79***********************************************8 PP | |||||||
2 | K-box | 109.7 | 3.2e-36 | 96 | 191 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 + +s++ea+++ +qqe++kLk++i+ +q+ +Rh+lGe+L+sLslkeL++Le++Lek+l+++Rs+K+e l++ ie +qk+e elq++n+ L Glyma.02G287700.1.p 96 NAESVSEANTQFYQQEASKLKRQIRDIQNLNRHILGEGLSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKREIELQNHNNFL 185 44559************************************************************************************* PP K-box 95 rkklee 100 r+k++e Glyma.02G287700.1.p 186 RAKIAE 191 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-40 | 19 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.207 | 19 | 79 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.49E-33 | 20 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.21E-43 | 20 | 94 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 21 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-33 | 21 | 41 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-26 | 28 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-33 | 41 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-33 | 56 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.8E-26 | 102 | 189 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.084 | 105 | 195 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MEFPNEAIIS EGSNSQKKTG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE 60 VALVVFSSRG RLYEYANNSV RGTIERYKKA CAASTNAESV SEANTQFYQQ EASKLKRQIR 120 DIQNLNRHIL GEGLSSLSLK ELKNLESRLE KGLSRVRSRK HETLFADIEF MQKREIELQN 180 HNNFLRAKIA ENERAQQRQQ DMIPGTECES TIPNSQSYDR NFFPVNLIDS NNNQYSRQDQ 240 TALQLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 5e-20 | 20 | 87 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 5e-20 | 20 | 87 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 5e-20 | 20 | 87 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 5e-20 | 20 | 87 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.37443 | 0.0 | seed coat |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|PubMed:11414613}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G287700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031274 | 0.0 | KT031274.1 Glycine max clone HN_CCL_16 MADS transcription factor (Glyma14g03100.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006575666.1 | 0.0 | agamous-like MADS-box protein AGL5 isoform X1 | ||||
Refseq | XP_006575667.1 | 0.0 | agamous-like MADS-box protein AGL5 isoform X2 | ||||
Refseq | XP_028220342.1 | 0.0 | agamous-like MADS-box protein AGL5 isoform X1 | ||||
Refseq | XP_028220346.1 | 0.0 | agamous-like MADS-box protein AGL5 isoform X2 | ||||
Swissprot | Q93XH4 | 1e-124 | MADS1_VITVI; Agamous-like MADS-box protein MADS1 | ||||
TrEMBL | A0A445LVI8 | 1e-180 | A0A445LVI8_GLYSO; Agamous-like MADS-box protein AGL5 isoform A | ||||
TrEMBL | I1JJ56 | 1e-180 | I1JJ56_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G45730.4 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF684 | 29 | 102 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 1e-103 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G287700.1.p |
Entrez Gene | 100782733 |
Publications ? help Back to Top | |||
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