PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G285900.1.p
Common NameGLYMA_02G285900, LOC100790175
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 338aa    MW: 38172.8 Da    PI: 7.2234
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G285900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.65.4e-33189246259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s++prsYYrCts++C vkk+vers +dp++v++tYeg+Hnh+
  Glyma.02G285900.1.p 189 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCGVKKRVERSFQDPTIVITTYEGQHNHH 246
                          8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-35173248IPR003657WRKY domain
SuperFamilySSF1182906.8E-29181248IPR003657WRKY domain
PROSITE profilePS5081132.156183248IPR003657WRKY domain
SMARTSM007742.3E-38188247IPR003657WRKY domain
PfamPF031064.9E-26189246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MANEKDRFYD PFHYNNHHDQ QLNHSSSSFP LFFRDNNNNS APISSQNFQG FDDHNNNSSS  60
DHHHTTFTDC LHGSMDYNTL SRVFDMSCSS SEVISSIDEN PKKPSAGGDS VGVRGNQSTP  120
NSSVSSPSNE AEAIIEEDST KSQKDKQPKA CEADGDEKPK KENKPKKKEK KPREPRFAFL  180
TKSEIDHLED GYRWRKYGQK AVKNSPYPRS YYRCTSQKCG VKKRVERSFQ DPTIVITTYE  240
GQHNHHCPAT LRGSAASMLS SPSFFGSSYM ASSLPQDFLA QLVPSYSQIN DHQSPMFHQN  300
LSHNLHPQPQ QQHQFQLSHD HGLLQDLLPS FPGKHEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-271812491078Probable WRKY transcription factor 4
2lex_A3e-271812491078Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163170KPKKKEKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G285900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518509.10.0WRKY transcription factor 71
TrEMBLI1JJ370.0I1JJ37_SOYBN; Uncharacterized protein
STRINGGLYMA02G45530.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.15e-48WRKY DNA-binding protein 71