PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G281700.3.p
Common NameGLYMA_02G281700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 813aa    MW: 89836.2 Da    PI: 6.5556
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G281700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37.1e-2445146199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F 
  Glyma.02G281700.3.p  45 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 132
                          99*****************************8544444..48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++ +l+++++r+
  Glyma.02G281700.3.p 133 --WNEKNQLLLGIRRA 146
                          ..8899999****997 PP
2Auxin_resp118.74.7e-39171254183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+t+s F+++YnPras+seF ++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Glyma.02G281700.3.p 171 AAHAAATNSRFTIFYNPRASPSEFAIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 254
                          79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-4930174IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-4238160IPR015300DNA-binding pseudobarrel domain
CDDcd100178.92E-2244145No hitNo description
PROSITE profilePS5086312.54845147IPR003340B3 DNA binding domain
PfamPF023624.5E-2245146IPR003340B3 DNA binding domain
SMARTSM010191.8E-2445147IPR003340B3 DNA binding domain
PfamPF065077.8E-34171254IPR010525Auxin response factor
PfamPF023094.1E-8667760IPR033389AUX/IAA domain
SuperFamilySSF542777.19E-8668752No hitNo description
PROSITE profilePS5174523.264676762IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MHADAETDEV YAQMTLQPLS PQEQKEVYLL PAELGTPSKQ PTNYFCKTLT ASDTSTHGGF  60
SVPRRAAEKV FPPLDYSQQP PAQELIARDL HDNEWKFRHI FRGQPKRHLL TTGWSVFVSA  120
KRLVAGDSVL FIWNEKNQLL LGIRRANRPQ TIMPSSVLSS DSMHIGLLAA AAHAAATNSR  180
FTIFYNPRAS PSEFAIPLAK YVKAVYHTRV SVGMRFRMLF ETEESSVRRY MGTITGISDL  240
DPVRWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYPSPFPLR LKRPWPSGLP  300
SLYGLKDGDM GIGSPFMWLQ GGLGDQGMQS LNFQGLGVTP WMQPRLDPSI PGLQPELYQA  360
ITSSAFQEMR TMDLSKSSQS LLQFQQTSNV PSAHASEVQR QLLPQSQLQN TLLHNFQENQ  420
VPAQSQLLQQ QLHRYHPYSD QQQQQQQLKN LPVQQQLPNV ISPMSKFASG TQSQSPPMQA  480
LASHCQQQSF PEPMRNHISG SDVSPIQSLL GSFSQDGTSQ LLNLSGSNSV MSSAAILPKQ  540
ITAEPPQLPS AASQCILPQV ENLGTSQSNV SELAALPPFP GREHSAYHGA ADPQSNLLFG  600
INIDPSSLML QSGMSNLRNI GKVNDSLSLP FSTSNCGGAT GTDFPLSSNM TTSSCVDESG  660
FLQCSENVDQ ANIPTGTFVK VHKSGSFGRS LDISKFSSYD ELISELARMF GLEGQLEDPK  720
TQRSGWQLVF VDRENDVLLL GDDPWQEFVN NVWYIKILSP LEVQQMGKVL SPSTSAPGDK  780
LSTPVNSCDN YVSQQELRSS RNGMASMGSF HY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1261275115388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.273790.0cotyledon| flower| hypocotyl| pod| root| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G281700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028219799.10.0auxin response factor 6-like isoform X2
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A0R0L9C40.0A0A0R0L9C4_SOYBN; Auxin response factor
STRINGGLYMA02G45100.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]