PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G280300.1.p
Common NameGLYMA_02G280300, LOC100805913
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 527aa    MW: 59377.9 Da    PI: 6.8929
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G280300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-182075257
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                         +kR   t+ ql++Le+++++++yp++e++  LA++lgLte+q++ WF+ rR k+k+
  Glyma.02G280300.1.p 20 KKRKLKTPAQLKALEDFYNEHKYPTEEMKLVLAEELGLTEKQISGWFCHRRLKDKR 75
                         89****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-20275IPR009057Homeodomain-like
PROSITE profilePS5007116.9081676IPR001356Homeobox domain
SMARTSM003891.3E-191880IPR001356Homeobox domain
SuperFamilySSF466893.51E-181883IPR009057Homeodomain-like
CDDcd000867.59E-172075No hitNo description
PfamPF000465.9E-162075IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MEESSELQSE ENKVSNEKNK KRKLKTPAQL KALEDFYNEH KYPTEEMKLV LAEELGLTEK  60
QISGWFCHRR LKDKRLMKDE AVANGRQDRS SGVIQDRGSG LGQDSCGSSK HADHRYLDPK  120
EVESHGLYNH ELSVADMTHR RRNHYPENVS GVDDTSSESS SFLQERFSQG QDPYDMEPSR  180
HLTPNGALPP LNPKGAVKMG HKPSGYLKVK GEIEHAAITA VRKQLGRHYL EDGPLLGIEF  240
DPLPPGAFEC QTADTANEPY SVANPLLSNS PEIFAAKRQP SLSSRYDSYY TKFRSQDSHM  300
EGADFGSLHE SDFQDKQDKK ACQNIKQRQS LYGYTNNFPG RNTFPDLYED STGEASAYNS  360
NKSHRMSTKH GVEGMRSDSA SNHSDHYEEK LTVKQKTLML HGYDNINPKN IQRSEHVKSK  420
PSSSIHNSRV PMDTEERGLS ARMAKEEMFK GNRKAKNTYC DVEGAGMLSN EIMVAKRAKV  480
DMLQQYNVKK SPVAEMELKK IQRSVAEMPS SFSEDETADT SSSLDY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.617680.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G280300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519513.10.0uncharacterized protein LOC100805913 isoform X1
RefseqXP_028219637.10.0uncharacterized protein LOC114401325 isoform X2
TrEMBLA0A445LVA40.0A0A445LVA4_GLYSO; Homeobox-DDT domain protein RLT1 isoform A
TrEMBLI1JIY20.0I1JIY2_SOYBN; Uncharacterized protein
STRINGGLYMA02G44910.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57923051
Representative plantOGRP8823814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.13e-79HB-other family protein