PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G280000.1.p
Common NameGLYMA_02G280000, LOC100776306
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 356aa    MW: 37500.2 Da    PI: 8.3444
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G280000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702215.41.3e-661352963154
               DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkl 91 
                          sg+++CqdCGnqakkdC+ +RCRtCCksrgfdC thvkstWvpaa+rrerq +++a+ +  a s+ +++ +k++r   +++++++s+t++
  Glyma.02G280000.1.p 135 SGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTSATVAPVAGSSgSTSGTKKPRL-IASQTTTTSHTST 223
                          7889**********************************************99998888887777746666777776.588999999**** PP

               DUF702  92 ssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                          s+++++++++tss          lP +v+++avf+cvrv++v+dg++e+aYq++v+igGh fkG+LydqG+e+
  Glyma.02G280000.1.p 224 SNTTPPRSFDTSSshqdagfkesLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHEFKGFLYDQGAEN 296
                          ***********999********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.6E-60137295IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.2E-27139181IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.5E-27247293IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MWSTPTRSIN YPEMGMFVVA PASSFHPNLH HHHHHHHQPS PNDPAVMVDS LNPATALGVG  60
VIPLLAPTPC HESDNNILGN RTRGGGIQFW QDQQQHNQGN YTKKPQQGLL DHNSNTSSGN  120
LVQNSGGVTA SGTSSGGTTC QDCGNQAKKD CTNRRCRTCC KSRGFDCPTH VKSTWVPAAR  180
RRERQLMTSA TVAPVAGSSG STSGTKKPRL IASQTTTTSH TSTSNTTPPR SFDTSSSHQD  240
AGFKESLPGQ VRAPAVFKCV RVTAVEDGQD EYAYQAVVKI GGHEFKGFLY DQGAENRDVY  300
PNLSELHLGG GNGGSGGAGR NGVSSSSPMM DPNDVYAASG GGLLGGSSAY GNPMN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.430880.0hypocotyl| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}.
UniprotTISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G280000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575625.10.0protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK95e-84LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLI1JIY00.0I1JIY0_SOYBN; Uncharacterized protein
STRINGGLYMA02G44860.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.27e-72Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]