PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G267500.1.p
Common NameGLYMA_02G267500, LOC100812856
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 422aa    MW: 46294 Da    PI: 7.793
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G267500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.1e-095176126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         +++++C +++rtG C yG +C+++H+
  Glyma.02G267500.1.p 51 PGEPECLYYLRTGMCGYGTNCRYHHP 76
                         5789*********************8 PP
2zf-CCCH37.53.8e-1295119327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C +f++tGtCkyG++Ck++H++
  Glyma.02G267500.1.p  95 QPDCEYFLKTGTCKYGSTCKYHHPK 119
                          789********************96 PP
3zf-CCCH38.12.6e-12142164527
                          --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                           C++++rtG Ck+G  CkF+H++
  Glyma.02G267500.1.p 142 SCPYYMRTGSCKFGVACKFHHPQ 164
                          6********************97 PP
4zf-CCCH40.16.2e-13278303227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++Cr+f+ tGtCkyG+ CkF+H++
  Glyma.02G267500.1.p 278 DQPECRYFMSTGTCKYGSDCKFHHPK 303
                          689*********************96 PP
5zf-CCCH322.1e-10321345226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C++++ +G Ck+G++CkF H+
  Glyma.02G267500.1.p 321 GQAVCSYYRIYGMCKFGPTCKFDHP 345
                          7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.455078IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-55077IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-65276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-65577IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.47892120IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-692119IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-1095119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-697121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-598119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6136165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638137165IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4139164IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10141164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-5142165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624276304IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6276303IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-11278303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-7280305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-6282303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5317345IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544319347IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6319346IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-7321345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MPENRQVLRN ADSGDNIEGG ADFSEAIRHL KINDNWDRDA AAQSTQYPDR PGEPECLYYL  60
RTGMCGYGTN CRYHHPAHIS IGTHYGEELP QRAGQPDCEY FLKTGTCKYG STCKYHHPKD  120
RRGAAPVSFN TLGLPMRQEE KSCPYYMRTG SCKFGVACKF HHPQHASLGA YPLAGSPTPT  180
STIIPTSGLP YAGGFPAWSA VPRMSYLSGQ GLQSYVPPFL SSSQGVIPVQ SWNNYMGNMN  240
PAMPNGFLGS NLVYDYMNLG ESLFGGQAIN SALPNRPDQP ECRYFMSTGT CKYGSDCKFH  300
HPKERMSQSL INPLGLPVRP GQAVCSYYRI YGMCKFGPTC KFDHPVLTIP QNYGLTSPAM  360
NVLDTPLTRG LSNVQPPETS PSKLSDKKLQ HSDAKAATED SSKQDDTTLN SFPASAEPLH  420
N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.169800.0flower| leaf| stem| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G267500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976690.0BT097669.1 Soybean clone JCVI-FLGm-22K6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625585.10.0zinc finger CCCH domain-containing protein 3 isoform X1
RefseqXP_014625589.10.0zinc finger CCCH domain-containing protein 3 isoform X1
RefseqXP_028218146.10.0zinc finger CCCH domain-containing protein 3-like isoform X1
RefseqXP_028218155.10.0zinc finger CCCH domain-containing protein 3-like isoform X1
TrEMBLA0A445LUQ80.0A0A445LUQ8_GLYSO; Zinc finger CCCH domain-containing protein 3 isoform A
TrEMBLK7KAZ90.0K7KAZ9_SOYBN; Uncharacterized protein
STRINGGLYMA02G43510.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-114C3H family protein