PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G267400.1.p | ||||||||
Common Name | GLYMA_02G267400, Glyma02g43500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 216aa MW: 23433 Da PI: 5.3332 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.8 | 1.6e-19 | 25 | 75 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a+++a+++++g Glyma.02G267400.1.p 25 TRFRGVRKRP-WGRFAAEIRDpWK----KQRVWLGTFDSAEDAARAYDKAARSFRG 75 589*******.**********883....5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.1E-12 | 25 | 75 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.33E-31 | 25 | 83 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.0E-31 | 26 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.7E-36 | 26 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-21 | 26 | 83 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.288 | 26 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-10 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-10 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MRRGRTAAAA AAVVDPTPDQ AKETTRFRGV RKRPWGRFAA EIRDPWKKQR VWLGTFDSAE 60 DAARAYDKAA RSFRGPKAKT NFPPFPGPAE ADHHSQIPLY QAHGLSTKFE PVVQVNRPTS 120 SGMSSTVESF SGPRVPSSSS RAKPLVVVVN PIIPLNDDED DCHSDCDSSS SVVDDGQDCV 180 LISSFRQPLP FDLNLPPSDA DDDNDDDLPA TALCL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-21 | 23 | 83 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.33049 | 0.0 | cotyledon| hypocotyl| leaf| meristem| root| seed coat| somatic embryo| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G267400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031072 | 0.0 | KT031072.1 Glycine max clone HN_CCL_96 AP2-EREBP transcription factor (Glyma02g43500.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304374.2 | 1e-156 | AP2-EREBP transcription factor | ||||
Refseq | XP_028218135.1 | 1e-156 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9SXS8 | 3e-41 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0K2CTA8 | 1e-154 | A0A0K2CTA8_SOYBN; AP2-EREBP transcription factor (Fragment) | ||||
TrEMBL | A0A445LUJ9 | 1e-154 | A0A445LUJ9_GLYSO; Ethylene-responsive transcription factor 3 | ||||
STRING | GLYMA02G43500.1 | 1e-155 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2263 | 34 | 84 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 5e-24 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G267400.1.p |
Publications ? help Back to Top | |||
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