PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G264700.1.p
Common NameGLYMA_02G264700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 339aa    MW: 37060.4 Da    PI: 8.6164
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G264700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-1862111255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  Glyma.02G264700.1.p  62 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFATAEDAARAYDRAAIILYG 111
                          59****999.**********954...5**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-3762125IPR001471AP2/ERF domain
PROSITE profilePS5103222.27362119IPR001471AP2/ERF domain
PfamPF008476.0E-1262107IPR001471AP2/ERF domain
CDDcd000185.70E-2062119No hitNo description
SuperFamilySSF541711.05E-2062119IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-2962119IPR001471AP2/ERF domain
PRINTSPR003672.6E-106374IPR001471AP2/ERF domain
PRINTSPR003672.6E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MASLLPQPQE TKPTATTATE TTPSETSITA SANKSSSSNN NNSSSNSRKC KGKGGPDNNK  60
FRYRGVRQRS WGKWVAEIRE PRKRTRKWLG TFATAEDAAR AYDRAAIILY GSRAQLNLQP  120
SGSSSQSSSS RSSSSSTQTL RPLLPRPSGF TFNFPFNSAP ATTVPYPYNN SHNYTYTPPV  180
LYPIDNSKNH NINTVQVHHP HHYRCPEEVV QVPHSESDLG GLGGNNNIVV DGSIRSTSYQ  240
RHGFLDNINN NNNHVHVQVQ HGVFSNQQQQ HQNSVVEGVN SSVVGSVSSS MDASSVDPDL  300
ALVGTMGLGS SSPFWSMANE DDYTGSLWDY NDPFFFDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-1963118359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.193470.0cotyledon| pod| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G264700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5182160.0EF518216.1 Glycine max SGR mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235932.20.0AP2-domain transcription factor SGR
RefseqXP_028217824.10.0ethylene-responsive transcription factor ABI4-like
TrEMBLA0A445LUF40.0A0A445LUF4_GLYSO; Ethylene-responsive transcription factor ABI4
TrEMBLK7KAX00.0K7KAX0_SOYBN; Uncharacterized protein
STRINGGLYMA02G43240.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88472940
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.12e-33ERF family protein