PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G261700.1.p | ||||||||
Common Name | DREB2A1, GLYMA_02G261700, Glyma02g42960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 393aa MW: 42737 Da PI: 4.5904 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.1e-16 | 78 | 128 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv eIr+p + r r +lg+f +a+eAa a+++a+++++g Glyma.02G261700.1.p 78 CNYRGVRQRT-WGKWVGEIREP---N-RgSRLWLGTFSSAQEAALAYDEAARAMYG 128 56*****999.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-11 | 78 | 128 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.00E-31 | 78 | 136 | No hit | No description |
SMART | SM00380 | 1.1E-34 | 79 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-20 | 79 | 136 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-31 | 79 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.43 | 79 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-9 | 80 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-9 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MGAYDQVSLK PLDSSRKRKS RSRGDGSKSV AETIAKWKEY NEHLYSGKDD SRTTRKAPAK 60 GSKKGCMKGK GGPQNSQCNY RGVRQRTWGK WVGEIREPNR GSRLWLGTFS SAQEAALAYD 120 EAARAMYGPC ARLNFPKITD YPSVKESLKD SSMAASSSCS SAATAASDTT TTTSNQSEVC 180 AVEDVIEKPA NVNDKFNDCH KAYVSASPTS RMKQEPKDEA VDHMDTGAGE IQDVGLEGTH 240 DTGQVAENVN KDQMDLSWID GFDFIDDYLK SFSADELFQV DELLGLIDNN PIDNSVLMQG 300 LDFGQMGFPG DGNPQVDDTP SSFIYQLQNP DAKLLGSLPH MEQTPSGVDY GLDFLKTVEP 360 GDYNGGGEEP PFLNLDDDLN HDSNGMQARK GG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-18 | 79 | 136 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 19 | SRKRKS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.9553 | 0.0 | leaf| root| somatic embryo |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G261700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX440386 | 0.0 | JX440386.1 Glycine max DRE-binding protein 2A;1 (DREB2A;1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028217593.1 | 0.0 | dehydration-responsive element-binding protein 2C-like | ||||
Refseq | XP_028217595.1 | 0.0 | dehydration-responsive element-binding protein 2C-like | ||||
TrEMBL | A0A445LUD2 | 0.0 | A0A445LUD2_GLYSO; Dehydration-responsive element-binding protein 2C isoform A | ||||
TrEMBL | I1JID3 | 0.0 | I1JID3_SOYBN; DRE-binding protein 2A1 | ||||
STRING | GLYMA02G42960.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1175 | 34 | 106 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 2e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G261700.1.p |
Publications ? help Back to Top | |||
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