PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G254200.4.p
Common NameGLYMA_02G254200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 313aa    MW: 35724.4 Da    PI: 7.9734
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G254200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.6e-073883346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                          WT e+ +++  a + + ++   +W ++a++++ g+t  +++  ++ 
  Glyma.02G254200.4.p 38 EWTREDNKKFESALAIYDKDtpdRWFKVAAMIP-GKTVFDVIKQYRE 83
                         7********************************.****999999875 PP
2Myb_DNA-binding42.21.9e-13138182347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ +++ +  ++G+g+W+ I+r +  ++t+ q+ s+ qky
  Glyma.02G254200.4.p 138 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 182
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.5873489IPR017884SANT domain
SMARTSM007173.8E-83587IPR001005SANT/Myb domain
SuperFamilySSF466892.96E-113791IPR009057Homeodomain-like
CDDcd001677.29E-73884No hitNo description
PfamPF002491.1E-53883IPR001005SANT/Myb domain
PROSITE profilePS5129419.353131187IPR017930Myb domain
SuperFamilySSF466893.3E-16133187IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-17134186IPR006447Myb domain, plants
SMARTSM007175.6E-11135185IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-11135181IPR009057Homeodomain-like
CDDcd001677.56E-9138182No hitNo description
PfamPF002496.1E-11138182IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MIFPRFCTNL KGMELETLYT PCYMPNSNWF VQESLSTEWT REDNKKFESA LAIYDKDTPD  60
RWFKVAAMIP GKTVFDVIKQ YRELEEDVSE IEAGHVPIPG YLASSFTFEL VDNHNYDGCR  120
RRLAPVRGSD QERKKGVPWT EEEHRRFLMG LLKYGKGDWR NISRNFVVTK TPTQVASHAQ  180
KYYIRQKVSG GKDKRRPSIH DMTTVNLTET SASDKNKPPV IAPQQKLNSM SKVQLDWTSS  240
HYNDGSLMVF NPNSDDLFVS SSSDVTSMAL KMQGQDLYEC ALREAYAKVK VPGFSMAPRD  300
FNNEAVFGIH AL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-16391011173RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.175020.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G254200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-159AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574483.10.0MYB transcription factor MYB83 isoform X1
SwissprotQ8S9H76e-90DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLI1JI550.0I1JI55_SOYBN; Uncharacterized protein
STRINGGLYMA02G42140.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.16e-93MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]