PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G249700.1.p | ||||||||
Common Name | GLYMA_02G249700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 221aa MW: 24223 Da PI: 5.998 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.7 | 1.9e-38 | 7 | 105 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC++dCv+apyf +q + +fa+vhk++Gasnv+kll++lp ++r+da+ ++ yeA ar++dP+yG+v++i +lq+q+++ Glyma.02G249700.1.p 7 SCGACKFLRRKCTSDCVFAPYFSYDQaSTHFAAVHKIYGASNVSKLLSHLPIQNRSDAAVTISYEALARMQDPIYGCVAHIYALQHQVAS 96 6***********************99779************************************************************* PP DUF260 90 lkaelallk 98 l++e+++l+ Glyma.02G249700.1.p 97 LQEEIDALG 105 ****98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.564 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.9E-37 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MTGFGSSCGA CKFLRRKCTS DCVFAPYFSY DQASTHFAAV HKIYGASNVS KLLSHLPIQN 60 RSDAAVTISY EALARMQDPI YGCVAHIYAL QHQVASLQEE IDALGNLVAN SSVSVVNCGS 120 VQATINSNNG TQFNILQHDA TRTQYCQNNL ANFLSQEGSA TVFQSLINSQ MDIELPNCTQ 180 VEHPSFGDFN SNPLEQFLSG IDQEMFVNHP WFKHNADIKN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-36 | 3 | 103 | 7 | 106 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-36 | 3 | 103 | 7 | 106 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G249700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-122 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006576098.1 | 1e-136 | LOB domain-containing protein 33 | ||||
TrEMBL | K7KAM4 | 1e-163 | K7KAM4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G41710.2 | 1e-164 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 | Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-55 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G249700.1.p |