PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G249400.1.p
Common NameGLYMA_02G249400, LOC100808556
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 96aa    MW: 11141.4 Da    PI: 6.9563
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G249400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-071558344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         +WT    +++  a +++  +   +W  Ia+ +g  ++++++k ++
  Glyma.02G249400.1.p 15 SWTRMQNKQFESALALYDQDtpdRWQNIAKVVG-DKSAEEVKRHY 58
                         7*****************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.6E-81264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-71368IPR009057Homeodomain-like
PROSITE profilePS500906.1331462IPR017877Myb-like domain
PfamPF002495.8E-61558IPR001005SANT/Myb domain
CDDcd001677.86E-71562No hitNo description
SuperFamilySSF466894.81E-121568IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MASNSHNNNK EIFSSWTRMQ NKQFESALAL YDQDTPDRWQ NIAKVVGDKS AEEVKRHYEI  60
LLEDLRHIES GRVPIPSYKS TDNNQERPLK CLNQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-2816861181RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G249400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518389.17e-67protein RADIALIS-like 3
RefseqXP_028216509.17e-67protein RADIALIS-like 3
SwissprotQ1A1732e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A445LTU42e-65A0A445LTU4_GLYSO; Protein RADIALIS-like 6
TrEMBLK7KAM32e-65K7KAM3_SOYBN; Uncharacterized protein
STRINGGLYMA02G41671.23e-66(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-35RAD-like 6