PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G246400.1.p

Common Name

GLYMA_02G246400, LOC100803231

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 296aa MW: 32630.4 Da PI: 6.2572

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G246400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.1	8.6e-10	217	258	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq Glyma.02G246400.1.p 217 AKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 258 69*****************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.053	208	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.52E-11	210	262	No hit	No description
SuperFamily	SSF47459	1.96E-13	210	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-12	210	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-11	214	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-7	218	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MALSLTSNGV NEYQKCVVEE EDGSQSTNGL SNDSASAITH SPPLCSNSNE YVHNKSTHYQ 60 LEEAESLINF KANEYNTLIQ GSESFLSVQK SWLFPKESNL HEGYNQWNHA ISPKSTTDMR 120 LVQNFSCFET SADYSSIFNG AKEKQHGESS SSGWLYSEPN VPSDSLLESA AQELVLTKRS 180 SMGENMQATN AKKPCTSASK AAKPKLNPFK DPQSVAAKNR RERISERLKI LQELVPNGSK 240 VDLVTMLEKA ISYVKFLQLQ VKVLAADEFW PVQGGKAPDI SQVRQAIDAI LSSQR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.389	1e-146	root

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	6847396	1e-146

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G246400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031123	0.0	KT031123.1 Glycine max clone HN_CCL_81 bHLH transcription factor (Glyma14g07590.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014628824.1	0.0	putative transcription factor bHLH086
Swissprot	Q9FJ00	2e-61	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A0R0L105	0.0	A0A0R0L105_SOYBN; Uncharacterized protein
STRING	GLYMA02G41370.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4937	32	53
Representative plant	OGRP3532	13	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	7e-64	RHD SIX-LIKE 1

Link Out ? help Back to Top
Phytozome	Glyma.02G246400.1.p
Entrez Gene	100803231

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]