PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G236800.1.p
Common NameLOC100817278
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 272aa    MW: 30552.9 Da    PI: 5.086
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G236800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.1e-20115164255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +++GVr+++ +grW+AeIrdp+    r kr +lg+f+taeeAa  +++a+ kl+g
  Glyma.02G236800.1.p 115 KFRGVRQRP-WGRWAAEIRDPT----RrKRLWLGTFDTAEEAATEYDRAAVKLKG 164
                          89*******.**********84....34************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.0E-891271IPR017392AP2/ERF transcription factor ERF/PTI6
Gene3DG3DSA:3.30.730.102.2E-30115173IPR001471AP2/ERF domain
SMARTSM003801.6E-37115178IPR001471AP2/ERF domain
PROSITE profilePS5103224.289115172IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22115173IPR016177DNA-binding domain
PfamPF008472.3E-13115164IPR001471AP2/ERF domain
CDDcd000181.66E-32115172No hitNo description
PRINTSPR003674.1E-10116127IPR001471AP2/ERF domain
PRINTSPR003674.1E-10138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MNLATPSSHF DNDPPCKTKT KTQRRLLRII VTDHDATDSD SDEEEEQQQQ TTRVKREITQ  60
INMQLPLSYN SSFPSSSSYY SSASACTSSE QNLKCKRPNK KPPPFSAVVR RRNNKFRGVR  120
QRPWGRWAAE IRDPTRRKRL WLGTFDTAEE AATEYDRAAV KLKGPNAVTN FPLTPEAAAE  180
APVVSVDNLS SDGGASYSDL VASPTSVLAY ECDSTPFDGF RYLDVEAFEF HIDAPLSLPD  240
VNVALTCHHG KKEEEVAFDE FDIDEFMTWP Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-21112173264ATERF1
3gcc_A9e-21112173264ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.321160.0meristem| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G236800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312500.0KT031250.1 Glycine max clone HN_CCL_182 AP2-EREBP transcription factor (Glyma02g40320.1_like1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519293.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A0R0LAC60.0A0A0R0LAC6_SOYBN; Uncharacterized protein
TrEMBLA0A445LT250.0A0A445LT25_GLYSO; Pathogenesis-related transcriptional activator PTI6
STRINGGLYMA02G40320.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.17e-29cytokinin response factor 4