PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G236200.1.p
Common NameGLYMA_02G236200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 365aa    MW: 39422.6 Da    PI: 6.8089
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G236200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.71.6e-10166223562
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                          kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  ++   + l +e
  Glyma.02G236200.1.p 166 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTSGLSTE 223
                          9*****************************************9999888777666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.3E-16162226IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.795164227IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-11166217No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-8166220No hitNo description
PfamPF001703.0E-9166224IPR004827Basic-leucine zipper domain
CDDcd147031.93E-23167216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MQDPSSNPNS NPNPNPHNAN AASQLPRPPQ ATASTAVAGA FSSSLFARSG GPHHRRAHSE  60
MSFRLPDDMM DLSPSDPFAG GSSTASMEEI GSEDDLFSTY IDVDKLSGAN GSGGAGNGAD  120
PTGEREKSPA RPRHRQSSSV DFGEIMDAKK AMPPDKLAEL WTIDPKRAKR ILANRQSAAR  180
SKERKARYIQ ELERKVQTLQ TEATTLSAQL TLYQRDTSGL STENTELKLR LQAMEQQAQL  240
RDALNEALKK EVERLKVATG EGMSHTESFN LGMHQMPFSG SNFIPIPPQS GPSGHQNMQM  300
PPFGHSPSTM PTHQLHQTSS HPYSEILQNE QLGRFQGLDI SSKGSTLVKS EGPSLSASES  360
SSTF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.300300.0cotyledon
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269|PubMed:27896439}.
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G236200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025982111.10.0transcription factor RF2b-like
RefseqXP_028215154.10.0transcription factor RF2b-like
SwissprotO228731e-102BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A445LT680.0A0A445LT68_GLYSO; BZIP transcription factor 18
TrEMBLI1JHM00.0I1JHM0_SOYBN; Uncharacterized protein
STRINGGLYMA02G40270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15483497
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.12e-92bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]