PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G225700.1.p | ||||||||
Common Name | GLYMA_02G225700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 388aa MW: 44640.8 Da PI: 8.6833 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.3e-17 | 102 | 148 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEd +l+ +vkq+G + W+ Ia+++ gR +kqc++rw+++l Glyma.02G225700.1.p 102 KGQWNQEEDRKLIMLVKQYGERKWAEIAEKLE-GRVGKQCRERWNNHL 148 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 44.8 | 2.8e-14 | 154 | 196 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eE+ +lvd +++ G++ W Ia++++ gR+++ +k++w+ Glyma.02G225700.1.p 154 KDSWSEEEERILVDTHARVGNR-WCEIAKRIQ-GRSENAIKNHWN 196 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.268 | 97 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.16E-26 | 101 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-16 | 101 | 150 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-27 | 103 | 156 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.8E-18 | 105 | 162 | No hit | No description |
CDD | cd00167 | 9.84E-15 | 105 | 148 | No hit | No description |
PROSITE profile | PS51294 | 17.511 | 153 | 203 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-13 | 153 | 201 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.62E-10 | 156 | 199 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-18 | 157 | 201 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MVRGESHGGD NGSQIYGYEA INASNPPLTA IDRFLCGHFS HQQQHARNND ASVFAAEEVF 60 NNKWTHINQT PTLCMKNMQV SGKNAKVVGR RSKKQSSVCW IKGQWNQEED RKLIMLVKQY 120 GERKWAEIAE KLEGRVGKQC RERWNNHLRP DIKKDSWSEE EERILVDTHA RVGNRWCEIA 180 KRIQGRSENA IKNHWNATKR RQNSKRKNKK TKSSINGKPH ILEDYIRSKT QIITNSNPTI 240 GSISTTDTTP HITLSQDSAA YPLNPVFYEP FANELLSMQQ IFTENVEASK HPKISPTSYL 300 DYCQMNVDDV GECEYSLQYP DNNNMHLNDT SLFPRETHPT PSNHLPSDLY YPSHLFNVVT 360 SNYGNQNLYN MDFRHQGCSD VKGERWI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 8e-41 | 101 | 202 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 8e-41 | 101 | 202 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G225700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT033766 | 1e-45 | CT033766.2 Medicago truncatula chromosome 5 clone mth4-42c9, COMPLETE SEQUENCE. | |||
GenBank | CT573510 | 1e-45 | CT573510.2 Medicago truncatula chromosome 5 clone mth4-41f7, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006576074.2 | 0.0 | transcription factor MYB119 | ||||
TrEMBL | I1JHB9 | 0.0 | I1JHB9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G39070.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4129 | 31 | 58 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 6e-64 | myb domain protein 119 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G225700.1.p |