PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G216600.4.p
Common NameGLYMA_02G216600, LOC100778970
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 25918.6 Da    PI: 9.7584
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G216600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF854.4e-271059251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstgkly+++s
  Glyma.02G216600.4.p 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFAS 59
                         8***********************************************86 PP
2K-box87.52.6e-2981170998
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                           ++++ + +q+e+a L+++++nLq+++R+++Ge+L+ L++keLq+Le+qLe sl  +R kK++ll+ +i+el +k + +++en +L kk+
  Glyma.02G216600.4.p  81 SSASEIKFWQREAAMLRQQLHNLQESHRKMMGEELSGLTVKELQNLENQLEISLHGVRMKKDQLLMGEIQELNRKGNLIHQENVELYKKV 170
                          577899********************************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.497161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-31281IPR002100Transcription factor, MADS-box
CDDcd002651.94E-43274No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-28323IPR002100Transcription factor, MADS-box
PfamPF003197.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.9E-2884170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.9686176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMIFSS TGKLYDFASS  60
SMKSVMDRYS KSKEEPCQLG SSASEIKFWQ REAAMLRQQL HNLQESHRKM MGEELSGLTV  120
KELQNLENQL EISLHGVRMK KDQLLMGEIQ ELNRKGNLIH QENVELYKKV YGTQDDNETN  180
RDSVLTNGLG IGEDLQVPVN LQLSQPQQQQ QHYKASSGTT KLGRLQLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-20174174MEF2C
5f28_B4e-20174174MEF2C
5f28_C4e-20174174MEF2C
5f28_D4e-20174174MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G216600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575365.11e-167MADS-box transcription factor 23 isoform X7
RefseqXP_028213354.11e-167MADS-box transcription factor 23-like isoform X9
SwissprotQ6EP491e-99MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0R0KZE11e-166A0A0R0KZE1_SOYBN; Uncharacterized protein
STRINGGLYMA02G38091.11e-155(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.14e-96AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]