PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G216600.1.p | ||||||||
Common Name | GLYMA_02G216600, LOC100778970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 27627.7 Da PI: 10.0281 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.8 | 5e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstgkly+++s Glyma.02G216600.1.p 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 87.3 | 3e-29 | 81 | 170 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ + +q+e+a L+++++nLq+++R+++Ge+L+ L++keLq+Le+qLe sl +R kK++ll+ +i+el +k + +++en +L kk+ Glyma.02G216600.1.p 81 SSASEIKFWQREAAMLRQQLHNLQESHRKMMGEELSGLTVKELQNLENQLEISLHGVRMKKDQLLMGEIQELNRKGNLIHQENVELYKKV 170 567899********************************************************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.497 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.48E-43 | 2 | 74 | No hit | No description |
SuperFamily | SSF55455 | 1.7E-31 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.2E-28 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.96 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMIFSS TGKLYDFASS 60 SMKSVMDRYS KSKEEPCQLG SSASEIKFWQ REAAMLRQQL HNLQESHRKM MGEELSGLTV 120 KELQNLENQL EISLHGVRMK KDQLLMGEIQ ELNRKGNLIH QENVELYKKV YGTQDDNETN 180 RDSVLTNGLG IGEDLQVPVN LQLSQPQQQQ QHYKASSGTT KLGLPRRFLL GFVGLPRSSL 240 IFW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-20 | 1 | 74 | 1 | 74 | MEF2C |
5f28_B | 7e-20 | 1 | 74 | 1 | 74 | MEF2C |
5f28_C | 7e-20 | 1 | 74 | 1 | 74 | MEF2C |
5f28_D | 7e-20 | 1 | 74 | 1 | 74 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G216600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006575363.1 | 1e-180 | MADS-box transcription factor 23 isoform X4 | ||||
Refseq | XP_028213346.1 | 1e-180 | MADS-box transcription factor 23-like isoform X8 | ||||
Swissprot | Q6EP49 | 3e-99 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A0R0L5G2 | 1e-178 | A0A0R0L5G2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G38091.1 | 1e-163 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF891 | 25 | 60 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 9e-96 | AGAMOUS-like 16 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G216600.1.p |
Entrez Gene | 100778970 |
Publications ? help Back to Top | |||
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