PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G215600.1.p
Common NameGLYMA_02G215600, LOC100776838
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 311aa    MW: 33339.9 Da    PI: 6.5045
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G215600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.85.6e-17210245134
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +Cgt++  Tp++Rrgp+g+++LCnaCGl+++ +g
  Glyma.02G215600.1.p 210 CKHCGTSSksTPMMRRGPSGPRSLCNACGLFWANRG 245
                          ********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.23474109IPR010399Tify domain
SMARTSM009791.8E-1374109IPR010399Tify domain
PfamPF062006.0E-1475108IPR010399Tify domain
PfamPF062036.2E-16142184IPR010402CCT domain
PROSITE profilePS5101712.481142184IPR010402CCT domain
PROSITE profilePS5011410.317204255IPR000679Zinc finger, GATA-type
SMARTSM004015.8E-15204257IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-12206256No hitNo description
Gene3DG3DSA:3.30.50.107.3E-16208251IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.88E-15209255No hitNo description
PfamPF003201.2E-14210245IPR000679Zinc finger, GATA-type
PROSITE patternPS003440210237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEPSAMYGPS QPLNIPSRIG AGERDDGSGN EPAVDGHHHH IQYETHALDD GAAGGAVVVE  60
DVTSDAVYVS GGGGPEESSQ LTLSFRGQVY VFDAVTPDKV QAVLLLLGGC ELSSGGSPCV  120
DPGAQQNQRG SMEFPKCSLP QRAASLDRFR QKRKERCFDK KVRYSVRQEV ALRMHRNKGQ  180
FTSSKKQDGA NSYGTDQDSG QDDSQSETSC KHCGTSSKST PMMRRGPSGP RSLCNACGLF  240
WANRGALRDL SKRNQEHSLP PVEQVDGGND PDCRTAAADP AQNNLAAFSE PVNPALVADR  300
KVFQSQKMLE *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G215600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518268.10.0GATA transcription factor 25
RefseqXP_028213198.10.0GATA transcription factor 25-like
SwissprotQ9LRH65e-87GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A445LSA90.0A0A445LSA9_GLYSO; GATA transcription factor 25
TrEMBLK7K9Y20.0K7K9Y2_SOYBN; Uncharacterized protein
STRINGGLYMA02G37980.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.25e-77GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]