PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G214600.1.p
Common NameGLYMA_02G214600, LOC100819057
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 254aa    MW: 28597.9 Da    PI: 5.2236
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G214600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.3e-10201249147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 
                          r +W++eEd++l  av+++G g+W+t a+       R+  q+  rw ++
  Glyma.02G214600.1.p 201 REPWSEEEDLQLRAAVRRWGEGNWATMAKSDDfpIQRSTTQLSKRWSTL 249
                          789***********************99864455557777777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.172196253IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-13196252IPR009057Homeodomain-like
SuperFamilySSF466893.45E-10198250IPR009057Homeodomain-like
SMARTSM007174.0E-8200252IPR001005SANT/Myb domain
PfamPF002493.0E-8201249IPR001005SANT/Myb domain
CDDcd116608.44E-12203251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKKTSNVFFS EDEAAVLLQR YNAQTILTLL QELANYPDSK FDWDDLVAKT STGISNAREY  60
QMLWRHLAYG HSFDENSDLD NQPLDDDSDL ECEREALPRP NKEIAAEASA CVQVMMTSFK  120
LNESTPTSSV IQAPLTINVP VFRSSRIANM ESSQSSSSGM QETNIVFPVT VKRQALPNVP  180
STRAVETRGS GSGYTSMKKK REPWSEEEDL QLRAAVRRWG EGNWATMAKS DDFPIQRSTT  240
QLSKRWSTLR KKE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G214600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351870.0AC235187.1 Glycine max strain Williams 82 clone GM_WBb0010C08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518263.20.0telomeric repeat-binding factor 1
RefseqXP_028213072.10.0telomeric repeat-binding factor 1-like
TrEMBLA0A0R0KZQ60.0A0A0R0KZQ6_SOYBN; Uncharacterized protein
TrEMBLA0A445LRW30.0A0A445LRW3_GLYSO; Uncharacterized protein
STRINGGLYMA02G37841.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Representative plantOGRP59231520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.16e-50MYB_related family protein