PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G211900.2.p

Common Name

GLYMA_02G211900

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ZF-HD

Protein Properties

Length: 268aa MW: 29291.7 Da PI: 6.9567

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G211900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	93.5	1.8e-29	62	118	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY+eC+kNhA+s GghavDGC+Efm++ g++g +++ CaAC+CHRnFHR+e + e Glyma.02G211900.2.p 62 AVRYRECQKNHAVSFGGHAVDGCCEFMAA-GDDGMLEGVICAACNCHRNFHRKEIDGE 118 79************************9.999******************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	8.0E-19	53	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.0E-26	63	115	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.1E-25	64	115	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.048	65	114	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	6.8E-21	193	265	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.5E-31	194	265	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.0E-26	207	263	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MVPKKGGKLE SDMEFDEQEE HEEEEEMGIP EPAVAVAAPQ TFDSRSKIGG GEARKSAFGV 60 AAVRYRECQK NHAVSFGGHA VDGCCEFMAA GDDGMLEGVI CAACNCHRNF HRKEIDGEMS 120 SFHHRAQPPP PPLHHHHQFS PYYHHRVPQH PTAAGYIHHH LTPPMSQHRP LALPAAASGG 180 GLSREEEDMS NPSSSGGGGG GGGGGSKKRF RTKFTQEQKD KMLAFAEQLG WRIQKHDESA 240 VEQFCAEINV KRNVLKVWMH NNKSTLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	6e-28	206	265	16	75	ZF-HD homeobox family protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	194	205	SGGGGGGGGGGS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.59835	0.0	flower\| pod

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G211900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ889680	1e-176	JQ889680.1 Hardenbergia violacea microsatellite Hvio16 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003518249.1	0.0	zinc-finger homeodomain protein 2 isoform X1
Refseq	XP_014624254.1	0.0	zinc-finger homeodomain protein 2 isoform X2
Refseq	XP_028212776.1	0.0	zinc-finger homeodomain protein 2-like isoform X1
Refseq	XP_028212784.1	0.0	zinc-finger homeodomain protein 2-like isoform X2
Swissprot	Q6YXH5	2e-67	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A0R0KZ85	0.0	A0A0R0KZ85_SOYBN; Uncharacterized protein
STRING	GLYMA02G37481.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	4e-60	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Glyma.02G211900.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]