PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G207100.1.p | ||||||||
Common Name | GLYMA_02G207100, LOC100793339 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 366aa MW: 42175.7 Da PI: 6.7425 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.9 | 1.6e-15 | 48 | 107 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g Glyma.02G207100.1.p 48 SIYRGVTRHRWTGRYEAHLWDkHCWNEsqnKKgRQVYLGAYDNEEAAAHAYDLAALKYWG 107 57***********************55656446*************************98 PP | |||||||
2 | AP2 | 51.6 | 2.3e-16 | 150 | 201 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Glyma.02G207100.1.p 150 SKYRGVARHHHNGRWEARIGKvF---G-NKYLYLGTYATQEEAATAYDLAAIEYRG 201 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.18E-17 | 48 | 117 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.67E-11 | 48 | 117 | No hit | No description |
Pfam | PF00847 | 3.6E-12 | 48 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-16 | 49 | 116 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.231 | 49 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-25 | 49 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-6 | 50 | 61 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.73E-24 | 150 | 211 | No hit | No description |
Pfam | PF00847 | 1.4E-12 | 150 | 201 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-18 | 150 | 211 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.9E-18 | 151 | 210 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.386 | 151 | 209 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-25 | 151 | 215 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-6 | 191 | 211 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MAKKSQLRTQ KNNATNDDIN LNATNTVITK VKRTRRSVPR DSPPQRSSIY RGVTRHRWTG 60 RYEAHLWDKH CWNESQNKKG RQVYLGAYDN EEAAAHAYDL AALKYWGQDT ILNFPLSNYL 120 NELKEMEGQS REEYIGSLRR KSSGFSRGIS KYRGVARHHH NGRWEARIGK VFGNKYLYLG 180 TYATQEEAAT AYDLAAIEYR GLNAVTNFDL SRYIKWLKPN NTNSNNDQIS INLTNINNNC 240 TNNFIPNPDQ EQEVSFFHNQ DSLNNTIVEE ATLVPHQPRP ASATLALELL LQSSKFKEMV 300 EMTSVANLST QMESDQLPQC TFPDHIQTYF EYEDSNKYEE GDDLLFKFSE FSSIVPFYHC 360 DEFES* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.29417 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G207100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006575322.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Refseq | XP_028212181.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 | ||||
Swissprot | Q94AN4 | 1e-107 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A445LRU9 | 0.0 | A0A445LRU9_GLYSO; AP2-like ethylene-responsive transcription factor isoform A | ||||
TrEMBL | K7K9S7 | 0.0 | K7K9S7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G36880.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-100 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G207100.1.p |
Entrez Gene | 100793339 |
Publications ? help Back to Top | |||
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