PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G195000.10.p | ||||||||
Common Name | GLYMA_02G195000, LOC100808195 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YA | ||||||||
Protein Properties | Length: 331aa MW: 36392 Da PI: 9.383 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 94.1 | 1.7e-29 | 161 | 216 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p YVNaKQy++I++RRq+Rak+ e+k+ +k rkpy+heSRh hA rRpRg+gGrF Glyma.02G195000.10.p 161 GPTYVNAKQYHGIIRRRQSRAKAVLENKM-IKRRKPYMHESRHLHATRRPRGCGGRF 216 699**************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.0E-33 | 158 | 219 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.83 | 159 | 219 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.1E-25 | 162 | 216 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.2E-21 | 162 | 184 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.2E-21 | 193 | 216 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MAMQTVYLKE HEGLVHSSVG QLSSVTSAPW WSALGSQPVY GEYCGQMKSF SLEISNYVDQ 60 FGAGKQAARG VEQLLDKGHT TQFTIFPDDC KMSGDAQNPQ ATLSLQSSLA EPHNRFEIGV 120 NQPMICAKYP YMDQFYGLFS AYGPQISGRI MLPINLTSDE GPTYVNAKQY HGIIRRRQSR 180 AKAVLENKMI KRRKPYMHES RHLHATRRPR GCGGRFLNTK SSTDGNGKNE SEVIKTSGRQ 240 FQSSASQSSE VLQSEVGMLN SSKQTNRSSP NISGSEVTSM YSREGFDGFS VNPLGSSVHS 300 LADMIGSEHG IIRPTKWVAA VPGNCYNLKI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-16 | 160 | 222 | 2 | 64 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 193 | RRRQSRAKAVLENKMIKRRK |
2 | 174 | 194 | RRRQSRAKAVLENKMIKRRKP |
3 | 175 | 194 | RRQSRAKAVLENKMIKRRKP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.3634 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G195000.10.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014623884.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
Refseq | XP_014623885.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
TrEMBL | I1JGG7 | 0.0 | I1JGG7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G35190.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 2e-57 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G195000.10.p |
Entrez Gene | 100808195 |