PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G194300.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19283.2 Da    PI: 9.4769
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G194300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.91.8e-20247449
                         -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +nk+n qvtfskRr+gi+KKA+EL +LC+++ avi+ s+ ++++ +
  Glyma.02G194300.1.p  2 SNKRNLQVTFSKRRTGIFKKASELTTLCGMNLAVIMSSPGNRVFSF 47
                         8****************************************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-18150IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.385151IPR002100Transcription factor, MADS-box
PfamPF003195.9E-21247IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-21270IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-71328IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-72849IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSNKRNLQVT FSKRRTGIFK KASELTTLCG MNLAVIMSSP GNRVFSFGSP SVDSVIQHYT  60
AQGPPPLLNL ELNEASIDEH ELHVHLNNLS DQIAAEKKHK KDLNRMLNAA EEHVWFVMPI  120
KSMNDAQLET YKKMLEELKT YANEKREKLL QRLPNTSMGV ATLTHDFRF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G194300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575280.11e-124agamous-like MADS-box protein AGL62
RefseqXP_028189624.11e-124agamous-like MADS-box protein AGL62
TrEMBLA0A0B2RUK81e-123A0A0B2RUK8_GLYSO; Agamous-like MADS-box protein AGL62 (Fragment)
STRINGGLYMA02G35080.21e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3510622
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-28AGAMOUS-like 62