PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G194000.1.p
Common NameGLYMA_02G194000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 190aa    MW: 21870.2 Da    PI: 9.701
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G194000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.21.2e-092654230
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHH CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvL 30
                         +++n++  qvtfskRr  i+KKA+EL  L
  Glyma.02G194000.1.p 26 KVNNERYLQVTFSKRRIEIFKKASELAPL 54
                         67899999******************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.15E-111760IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-41771IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.0161760IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-71939IPR002100Transcription factor, MADS-box
PfamPF003191.5E-102660IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-73954IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDSKSVPSLK GRIKKTKGQQ KIEMKKVNNE RYLQVTFSKR RIEIFKKASE LAPLYSVDLA  60
PHLPLLSYNT MDEHKLHAHL NDLANRLAKD KKHIEDLNHL LKVAEDHFWW AIPIESINSA  120
QVEKYKRLLE ELKTHVDEKC GSSYSNVNST LTMHRPPLMQ NYVGVIDGSI LCHRQFNNIH  180
INGHGDGPTL
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G194000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576034.12e-98agamous-like MADS-box protein AGL62
TrEMBLA0A0R0L3Q01e-139A0A0R0L3Q0_SOYBN; Uncharacterized protein (Fragment)
STRINGGLYMA02G35048.11e-113(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-16AGAMOUS-like 62