PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G189500.1.p | ||||||||
Common Name | GLYMA_02G189500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 207aa MW: 23554.5 Da PI: 8.9677 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.5 | 1.3e-11 | 11 | 49 | 3 | 41 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 i+n +r++ f k +ng lKK E+ +LCd++++ ii+ Glyma.02G189500.1.p 11 INNPLKRKTIFKKIKNGFLKKVDEITTLCDIQACAIIYT 49 8999*********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.1E-10 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.85E-16 | 1 | 81 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.535 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.78E-17 | 2 | 83 | No hit | No description |
Pfam | PF00319 | 1.3E-10 | 11 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MARKKLLLSY INNPLKRKTI FKKIKNGFLK KVDEITTLCD IQACAIIYTL DEPEPKVWLF 60 NQGMESVISR FMGVSKLARS KRMLCQENLL KRNMMKAQGK LMSEIKKKEI DLFMCQYFSS 120 WNNDNANIID QNDIILLADK KLEITKKNEI FQVQEVTPAI KNGGETMTKG EQALVANVDA 180 MPNLNWSNDN INDDDGDGID VKIGRC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G189500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006591590.1 | 1e-110 | agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_028186315.1 | 1e-110 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0B2NQI9 | 1e-148 | A0A0B2NQI9_GLYSO; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | K7K9F6 | 1e-148 | K7K9F6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G34345.1 | 1e-149 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16996 | 2 | 8 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 2e-21 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G189500.1.p |