PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G187400.1.p | ||||||||
Common Name | GLYMA_02G187400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 104aa MW: 12126.1 Da PI: 8.7915 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.3 | 9.5e-14 | 3 | 47 | 5 | 49 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n++n v f k + ++KKA+EL +LC+++ vi+fs++++++ + Glyma.02G187400.1.p 3 NEINLRVKFLKCHTRVFKKASELAILCGVDLIVIMFSPSNRVFSF 47 899999***********************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.521 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-6 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-14 | 2 | 60 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-15 | 3 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-5 | 13 | 28 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-5 | 28 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MRNEINLRVK FLKCHTRVFK KASELAILCG VDLIVIMFSP SNRVFSFGSS NYLNEAYSTL 60 DEGELYAHLN YLTNQITIDK KCIKDLNYLL KVIKDQFWWG YTY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G187400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003537139.1 | 3e-41 | agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_028184633.1 | 3e-41 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0R0KYZ0 | 2e-70 | A0A0R0KYZ0_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445LQT6 | 2e-70 | A0A445LQT6_GLYSO; Agamous-like MADS-box protein AGL62 | ||||
STRING | GLYMA10G10690.2 | 1e-40 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-14 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G187400.1.p |