PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G181600.1.p | ||||||||
Common Name | GLYMA_02G181600, LOC100808363 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 310aa MW: 35051.1 Da PI: 5.8148 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.1e-19 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p++ r+r +lg+f taeeAa a+++a+++l+g Glyma.02G181600.1.p 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAALAYDEAARRLYG 78 69****999.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.14E-31 | 28 | 87 | No hit | No description |
Pfam | PF00847 | 2.4E-13 | 29 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-21 | 29 | 87 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-30 | 29 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-35 | 29 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.682 | 29 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MEGCKMFPPK PWKKGPTRGK GGPQNSSCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA 60 TAEEAALAYD EAARRLYGPD AYLNLPHMMM QPTIFTNSTA TKSHKYFKWF PSKNFISMFP 120 SRGGLLNLNA QPSVHVIHQK LQELKQNGVV ATSQTQSSPH TSSLSTHPKV VDLENFDIQN 180 HAEILPPLQE GNSRVSSQKT IVGDFEEKPQ IDLLEFLQQM GILKEEREEE KTNSSGSSTT 240 VSEAASRDES SEQAGVFSDM SSVNWEELIE MHEHDHGVAD SFYRASEEIQ FEAYDINEDL 300 TFSPSIWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-18 | 30 | 86 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G181600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003518110.1 | 0.0 | dehydration-responsive element-binding protein 2F | ||||
Refseq | XP_028184724.1 | 0.0 | dehydration-responsive element-binding protein 2F-like | ||||
TrEMBL | A0A0B2P9S0 | 0.0 | A0A0B2P9S0_GLYSO; Dehydration-responsive element-binding protein 2F | ||||
TrEMBL | I1JG74 | 0.0 | I1JG74_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G31350.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5477 | 31 | 50 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 2e-69 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G181600.1.p |
Entrez Gene | 100808363 |