PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G179500.1.p
Common NameGLYMA_02G179500, LOC102665149
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 393aa    MW: 44062.2 Da    PI: 8.2898
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G179500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.39.4e-09113170155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd..pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+  k +g +++ ++d  p++ g k k++++g f  + eAa+a++  + k++g
  Glyma.02G179500.1.p 113 SVYRGVTKSKGKGLFESFVWDkdPKTTGkKGKTVYIGGFKNELEAARAHDLIAIKIWG 170
                          78********9999*****994333366566**********99**********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.60E-13113180No hitNo description
SuperFamilySSF541718.5E-11113180IPR016177DNA-binding domain
PfamPF008471.9E-5113170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-10114180IPR001471AP2/ERF domain
SMARTSM003801.1E-8114184IPR001471AP2/ERF domain
PROSITE profilePS5103213.656114178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEPSMWSTEG MSTYWSQISE TCYQGHETTS RGPSNDHGTQ NWTQNEVLIP VPKHVQGSQF  60
PSNLIGWDEV PQQSITKSPT QTWVVASKKV EFEVKEPIKQ KRYRKRNLKK ITSVYRGVTK  120
SKGKGLFESF VWDKDPKTTG KKGKTVYIGG FKNELEAARA HDLIAIKIWG KFAYTNFPES  180
CYSKEILETQ SMSVRECILA IRRRSKNNST AKFDGCNISS SFARASVGVE ENNAIGDALP  240
NLDTTKQSLI QEIGQKSQTP TTLQNQHGII DENQFMYDDQ YLWSDLAFQN DPSFQIDASF  300
PLWSYDFGNT LVEDRASALG NALNWKISMF EKGNENPTKA GNDGISSFGS SSIGFHPMGS  360
NIQHFKAPNL QIAPVQRYEP LQYGFATNST HS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G179500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150412e-32AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575992.10.0uncharacterized protein LOC102665149
RefseqXP_028184690.10.0uncharacterized protein LOC114371455
TrEMBLA0A0R0KYC70.0A0A0R0KYC7_SOYBN; Uncharacterized protein
TrEMBLA0A445LQM20.0A0A445LQM2_GLYSO; AP2-like ethylene-responsive transcription factor AIL7
STRINGGLYMA02G31035.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.18e-20AINTEGUMENTA-like 7