PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G178100.1.p
Common NameGLYMA_02G178100, LOC100780919
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 423aa    MW: 47106 Da    PI: 7.7767
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G178100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.16.4e-31255309155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r+rWt+eLHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ +vkSHLQkYR+
  Glyma.02G178100.1.p 255 KTRIRWTQELHEKFVECVNRLGGAEKATPKAILRLMDSDGLTIFQVKSHLQKYRI 309
                          68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.347252312IPR017930Myb domain
SuperFamilySSF466899.68E-18253309IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-28253310IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23255310IPR006447Myb domain, plants
PfamPF002494.2E-9259308IPR001005SANT/Myb domain
PfamPF143794.3E-21338385IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MNENRIDCVG RTQQSYGLNG DWNSEFGNCS SQYFDVRQAS NMGTCNQPLA MASGGGVEQE  60
PHIGQNKSSS SIISRFKSPA SAFYATEMCM GGFPQYDSQI GNPSLMSHSS KFNDMEFPLY  120
QSLRQSLFMP SLANQPPPKF DLSNPLQEML KFHLNSDQCV RSLETFNKIP CGDFPGSNFL  180
PIEQHKLFID DAAPISRSPS IPSKGNQGQT VSCGSFNLPS AQLSFSSQQE MLSPTGSMPT  240
NSGNSSSNGS VVSSKTRIRW TQELHEKFVE CVNRLGGAEK ATPKAILRLM DSDGLTIFQV  300
KSHLQKYRIA KFMPQPTQGK SDKRTNAENV HLDVKTGFQI REALQLQLDV QRRLHEQLEI  360
QRKLQLRIEE QGKQLKMMFD QQQKTTDSHL ITENSDRPIS SKDVLVSIYE GSENSLFSSK  420
IS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-22255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-22255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-22255312158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-22255312158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-22255312158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-22255312158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-22255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-22255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-22255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-22255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-22255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-22255312259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G178100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2361410.0AC236141.2 Glycine max clone GM_WBb0004A16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575231.10.0myb family transcription factor PHL5 isoform X1
TrEMBLA0A0B2RTW60.0A0A0B2RTW6_GLYSO; Myb family transcription factor APL
TrEMBLI1JG490.0I1JG49_SOYBN; Uncharacterized protein
STRINGGLYMA02G30800.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.13e-68G2-like family protein